C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATP-binding cassette, sub-family A (ABC1), member 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000154262 ABCA6 9606 - 17:69078702-69141888 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000284425 ABCA6-001 69078702-69141874 protein_coding
  ENST00000446604 ABCA6-005 69078917-69098592 processed_transcript
  ENST00000589482 ABCA6-007 69085654-69087618 retained_intron
  ENST00000589803 ABCA6-003 69105491-69117988 retained_intron
  ENST00000590311 ABCA6-004 69103912-69115442 retained_intron
  ENST00000590645 ABCA6-002 69135230-69141888 protein_coding
  ENST00000592493 ABCA6-006 69114780-69115914 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000284425ENST00000446604ENST00000590311ENST00000590645
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000284425 3.228±0.00 0.298±0.00 0.885±0.00 1.476±0.00 2.085±0.70 3.537±1.16 2.440±0.35 10.901±10.49 5.558±1.61 4.225±2.31 0.850±0.00 1.962±1.08 0.111±0.00 0.581±0.33
ENST00000446604 4.114±0.00 0.841±0.00 N/A 0.531±0.00 1.894±0.00 3.433±0.00 N/A 0.680±0.00 7.150±0.00 N/A 0.630±0.00 N/A 0.322±0.07 0.626±0.16
ENST00000590311 N/A N/A 0.321±0.00 0.142±0.00 N/A 0.672±0.00 1.082±0.00 N/A 3.026±0.00 3.176±0.00 0.246±0.00 0.873±0.00 N/A N/A
ENST00000590645 N/A N/A 1.168±0.00 N/A N/A 3.518±0.00 2.487±0.00 N/A N/A 7.505±0.00 N/A 1.651±1.45 N/A 0.562±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00037T CIL_00037T_0001 CGP 17:68974488-69141888

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0006810 IEA transport
GO:0016021 IEA integral component of membrane
GO:0016887 IEA ATPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000044749 Abca6 ATP-binding cassette, sub-family A (ABC1), member 6 protein_coding Mus_musculus

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