C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family A (ABC1), member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000284425 ABCA6-001 ENSG00000154262 9606 - 17:69078702-69141874 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000284425
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000284425 3.228±0.00 0.298±0.00 0.885±0.00 1.476±0.00 2.085±0.70 3.537±1.16 2.440±0.35 10.901±10.49 5.558±1.61 4.225±2.31 0.850±0.00 1.962±1.08 0.111±0.00 0.581±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00037T CIL_00037T_0001 CGP 17:68974488-69141888

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0006810 IEA transport
GO:0016021 IEA integral component of membrane
GO:0016887 IEA ATPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044003 Abca6-001 protein_coding Mus_musculus 0 1958
ENSMUST00000150988 Abca6-002 processed_transcript Mus_musculus 0 604
ENSMUST00000106669 Abca8b-002 protein_coding Mus_musculus 0 488
ENSMUST00000020948 Abca8b-001 protein_coding Mus_musculus 0 488
ENSMUST00000106664 Abca8a-202 protein_coding Mus_musculus 0 477
ENSMUST00000046223 Abca8a-201 protein_coding Mus_musculus 0 477
ENSMUST00000100287 Abca8a-001 protein_coding Mus_musculus 0 477
ENSMUST00000044850 Abca9-001 protein_coding Mus_musculus 0 470
ENSMUST00000129810 Abca8a-004 processed_transcript Mus_musculus 1e-38 167

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