C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spindle and kinetochore associated complex subunit 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000154839 SKA1 9606 + 18:50374995-50394173 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000285116 SKA1-001 50374995-50394173 protein_coding
  ENST00000398452 SKA1-005 50375040-50392247 protein_coding
  ENST00000417656 SKA1-004 50375043-50392549 protein_coding
  ENST00000488454 SKA1-003 50375046-50392251 protein_coding
  ENST00000494518 SKA1-002 50375061-50392160 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000285116ENST00000398452ENST00000417656ENST00000488454ENST00000494518
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000285116 0.233±0.00 0.441±0.00 0.133±0.00 0.093±0.08 0.230±0.04 N/A 0.082±0.05 0.052±0.00 0.099±0.00 0.094±0.07 0.016±0.01 0.941±0.74 0.842±0.70 1.795±0.78
ENST00000398452 N/A N/A N/A N/A N/A 0.418±0.00 0.056±0.00 N/A 0.156±0.00 N/A N/A 0.758±0.00 N/A 0.839±0.00
ENST00000417656 N/A N/A N/A N/A N/A N/A 0.072±0.00 N/A N/A 0.068±0.00 N/A N/A N/A N/A
ENST00000488454 N/A N/A N/A N/A 0.226±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494518 N/A N/A N/A N/A N/A N/A N/A 0.211±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000940 IDA condensed chromosome outer kinetochore
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0005876 IDA spindle microtubule
GO:0007059 IMP chromosome segregation
GO:0007067 IMP mitotic nuclear division
GO:0008017 IDA microtubule binding
GO:0015630 IDA microtubule cytoskeleton
GO:0031110 IDA regulation of microtubule polymerization or depolymerization
GO:0051301 IMP cell division

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039354 ska1 spindle and kinetochore associated complex subunit 1 protein_coding Danio_rerio
ENSMUSG00000036223 Ska1 spindle and kinetochore associated complex subunit 1 protein_coding Mus_musculus

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