C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spindle and kinetochore associated complex subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000285116 SKA1-001 ENSG00000154839 9606 + 18:50374995-50394173 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000285116
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000285116 0.233±0.00 0.441±0.00 0.133±0.00 0.093±0.08 0.230±0.04 0.082±0.05 0.052±0.00 0.099±0.00 0.094±0.07 0.016±0.01 0.941±0.74 0.842±0.70 1.795±0.78

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000940 IDA condensed chromosome outer kinetochore
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0005876 IDA spindle microtubule
GO:0007059 IMP chromosome segregation
GO:0007067 IMP mitotic nuclear division
GO:0008017 IDA microtubule binding
GO:0015630 IDA microtubule cytoskeleton
GO:0031110 IDA regulation of microtubule polymerization or depolymerization
GO:0051301 IMP cell division

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000177604 Ska1-202 protein_coding Mus_musculus 0 638
ENSMUST00000040188 Ska1-201 protein_coding Mus_musculus 0 636
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000000002 69
ENSMUST00000048099 Tmem194-001 protein_coding Mus_musculus 0.000004 58

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