C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LSM11, U7 small nuclear RNA associated
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000155858 LSM11 9606 + 5:157743695-157760709 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000286307 LSM11-001 157743695-157760709 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000286307
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000286307 1.369±0.00 1.345±0.00 0.534±0.00 3.230±0.27 0.637±0.05 1.728±0.63 0.347±0.16 0.478±0.35 0.544±0.23 0.742±0.01 0.325±0.15 1.000±0.47 0.853±0.15 3.052±0.32

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005683 ISS U7 snRNP
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006398 ISS histone mRNA 3'-end processing
GO:0008334 TAS histone mRNA metabolic process
GO:0010467 TAS gene expression
GO:0031124 TAS mRNA 3'-end processing
GO:0071204 ISS histone pre-mRNA 3'end processing complex
GO:0071209 IDA U7 snRNA binding
GO:1900087 IMP positive regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053025 lsm11 LSM11, U7 small nuclear RNA associated protein_coding Danio_rerio
ENSDARG00000090854 lsm11 LSM11, U7 small nuclear RNA associated protein_coding Danio_rerio
ENSMUSG00000044847 Lsm11 U7 snRNP-specific Sm-like protein LSM11 protein_coding Mus_musculus

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