C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: U7 snRNP-specific Sm-like protein LSM11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000044847 Lsm11 10090 - 11:45928269-45944935 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000062458 Lsm11-002 45931080-45944935 nonsense_mediated_decay
  ENSMUST00000129820 Lsm11-001 45928269-45944935 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000062458ENSMUST00000129820
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000062458 0.889±0.00 4.040±1.09 N/A N/A 3.106±0.37 2.508±0.46 0.446±0.00 0.403±0.07 0.799±0.55 0.850±0.00 N/A 2.169±0.67 1.117±0.56 0.481±0.23
ENSMUST00000129820 1.876±0.33 1.595±0.10 1.809±0.32 6.344±3.61 1.569±0.37 2.149±0.28 1.063±0.06 0.877±0.06 0.794±0.41 1.641±0.15 0.494±0.12 2.729±0.69 0.665±0.33 0.322±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00053M CIL_00053M_0002 CGP 11:45852051-45944935
CIL_00094M CIL_00094M_0002 VISTA 11:45901358-46503267

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005683 ISS U7 snRNP
GO:0006398 IDA histone mRNA 3'-end processing
GO:0071204 IDA histone pre-mRNA 3'end processing complex
GO:0071209 ISS U7 snRNA binding
GO:1900087 ISS positive regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053025 lsm11 LSM11, U7 small nuclear RNA associated protein_coding Danio_rerio
ENSDARG00000090854 lsm11 LSM11, U7 small nuclear RNA associated protein_coding Danio_rerio
ENSG00000155858 LSM11 LSM11, U7 small nuclear RNA associated protein_coding Homo_sapiens

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