C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM11, U7 small nuclear RNA associated
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000286307 LSM11-001 ENSG00000155858 9606 + 5:157743695-157760709 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000286307
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000286307 1.369±0.00 1.345±0.00 0.534±0.00 3.230±0.27 0.637±0.05 1.728±0.63 0.347±0.16 0.478±0.35 0.544±0.23 0.742±0.01 0.325±0.15 1.000±0.47 0.853±0.15 3.052±0.32

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005683 ISS U7 snRNP
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006398 ISS histone mRNA 3'-end processing
GO:0008334 TAS histone mRNA metabolic process
GO:0010467 TAS gene expression
GO:0031124 TAS mRNA 3'-end processing
GO:0071204 ISS histone pre-mRNA 3'end processing complex
GO:0071209 IDA U7 snRNA binding
GO:1900087 IMP positive regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000062458 Lsm11-002 nonsense_mediated_decay Mus_musculus 0 1291
ENSMUST00000129820 Lsm11-001 protein_coding Mus_musculus 0 1291

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