C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 37 homolog A (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000155975 VPS37A 9606 + 8:17246571-17302427 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000324849 VPS37A-001 17246571-17298024 protein_coding
  ENST00000425020 VPS37A-002 17247094-17297587 nonsense_mediated_decay
  ENST00000518038 VPS37A-005 17246938-17268372 protein_coding
  ENST00000519381 VPS37A-007 17246931-17268273 nonsense_mediated_decay
  ENST00000519515 VPS37A-011 17298107-17302427 processed_transcript
  ENST00000520140 VPS37A-004 17246934-17295277 nonsense_mediated_decay
  ENST00000520997 VPS37A-010 17296461-17300282 processed_transcript
  ENST00000521005 VPS37A-006 17247244-17248007 protein_coding
  ENST00000521162 VPS37A-009 17295964-17300131 processed_transcript
  ENST00000521829 VPS37A-003 17247123-17295052 protein_coding
  ENST00000521976 VPS37A-008 17276436-17286611 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000324849ENST00000520140ENST00000521829
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000324849 3.796±0.00 2.816±0.00 6.372±0.00 3.443±0.75 5.609±0.00 3.161±1.30 4.859±0.00 2.454±0.00 4.602±0.00 6.643±0.00 4.002±0.44 4.037±0.25 6.533±0.00
ENST00000520140 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.453±0.00 14.183±0.00
ENST00000521829 N/A N/A N/A N/A N/A 8.749±4.01 8.597±0.00 16.413±0.00 12.936±0.00 N/A 13.187±0.00 16.733±0.00 37.810±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VB CIL_0001VB_0001 CGP 8:17156029-17246878
CIL_0001T6 CIL_0001T6_0001 CGP 8:17224964-17302427
CIL_00006T CIL_00006T_0002 CGP 8:17246571-17413528

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000813 IDA ESCRT I complex
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0008219 IEA cell death
GO:0010008 TAS endosome membrane
GO:0015031 IEA protein transport
GO:0016032 TAS viral process
GO:0016197 TAS endosomal transport
GO:0019058 TAS viral life cycle
GO:0019068 TAS virion assembly
GO:0019082 TAS viral protein processing
GO:0043162 IC ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0061024 TAS membrane organization
GO:0075733 TAS intracellular transport of virus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017119 vps37a vacuolar protein sorting 37A protein_coding Danio_rerio
ENSMUSG00000031600 Vps37a vacuolar protein sorting 37A (yeast) protein_coding Mus_musculus

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