C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: suppressor of var1, 3-like 1 (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000156502 SUPV3L1 9606 + 10:69180232-69209099 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000359655 SUPV3L1-001 69180232-69209098 protein_coding
  ENST00000422378 SUPV3L1-003 69180288-69200353 protein_coding
  ENST00000471069 SUPV3L1-005 69180250-69193263 retained_intron
  ENST00000478227 SUPV3L1-004 69187433-69197080 processed_transcript
  ENST00000483572 SUPV3L1-002 69180281-69195213 processed_transcript
  ENST00000486661 SUPV3L1-006 69187713-69195380 processed_transcript
  ENST00000497254 SUPV3L1-007 69207776-69209099 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000359655ENST00000471069ENST00000478227ENST00000497254
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000359655 3.805±0.00 1.505±0.00 1.067±0.00 2.872±0.84 1.681±0.00 1.982±0.37 6.785±0.00 2.160±0.61 1.842±1.32 1.042±0.00 4.829±0.00 4.566±2.44 2.824±1.22 7.501±0.19
ENST00000471069 N/A N/A N/A 1.687±0.75 1.925±0.00 N/A 1.206±0.00 N/A N/A 0.334±0.00 N/A N/A N/A N/A
ENST00000478227 N/A N/A N/A N/A N/A 1.906±0.00 N/A N/A N/A N/A N/A 3.557±0.00 N/A N/A
ENST00000497254 3.109±0.00 7.250±0.00 N/A 9.363±0.00 2.943±0.00 3.707±1.37 4.243±0.00 11.301±0.00 3.664±0.00 2.196±0.17 N/A 9.285±4.04 4.377±1.92 18.074±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000958 IMP mitochondrial mRNA catabolic process
GO:0000962 IDA positive regulation of mitochondrial RNA catabolic process
GO:0000965 IMP mitochondrial RNA 3'-end processing
GO:0003677 IMP DNA binding
GO:0003678 IMP DNA helicase activity
GO:0003723 TAS RNA binding
GO:0003725 IDA double-stranded RNA binding
GO:0004004 IDA ATP-dependent RNA helicase activity
GO:0004386 TAS helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005739 IDA mitochondrion
GO:0005759 IDA mitochondrial matrix
GO:0006200 IDA ATP catabolic process
GO:0006310 IMP DNA recombination
GO:0006401 IMP RNA catabolic process
GO:0016817 IEA hydrolase activity, acting on acid anhydrides
GO:0030307 IMP positive regulation of cell growth
GO:0032508 IMP DNA duplex unwinding
GO:0034458 IDA 3'-5' RNA helicase activity
GO:0035945 IMP mitochondrial ncRNA surveillance
GO:0035946 IMP mitochondrial mRNA surveillance
GO:0042645 IDA mitochondrial nucleoid
GO:0042803 IPI protein homodimerization activity
GO:0043066 IMP negative regulation of apoptotic process
GO:0044822 IDA poly(A) RNA binding
GO:0045025 IDA mitochondrial degradosome
GO:0070584 IMP mitochondrion morphogenesis
GO:0070827 IMP chromatin maintenance
GO:2000827 IMP mitochondrial RNA surveillance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077728 supv3l1 suppressor of var1, 3-like 1 (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000020079 Supv3l1 suppressor of var1, 3-like 1 (S. cerevisiae) protein_coding Mus_musculus

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