C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: suppressor of var1, 3-like 1 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000359655 SUPV3L1-001 ENSG00000156502 9606 + 10:69180232-69209098 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000359655
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000359655 3.805±0.00 1.505±0.00 1.067±0.00 2.872±0.84 1.681±0.00 1.982±0.37 6.785±0.00 2.160±0.61 1.842±1.32 1.042±0.00 4.829±0.00 4.566±2.44 2.824±1.22 7.501±0.19

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000958 IMP mitochondrial mRNA catabolic process
GO:0000962 IDA positive regulation of mitochondrial RNA catabolic process
GO:0000965 IMP mitochondrial RNA 3'-end processing
GO:0003677 IMP DNA binding
GO:0003678 IMP DNA helicase activity
GO:0003723 TAS RNA binding
GO:0003725 IDA double-stranded RNA binding
GO:0004004 IDA ATP-dependent RNA helicase activity
GO:0004386 TAS helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005739 IDA mitochondrion
GO:0005759 IDA mitochondrial matrix
GO:0006200 IDA ATP catabolic process
GO:0006310 IMP DNA recombination
GO:0006401 IMP RNA catabolic process
GO:0016817 IEA hydrolase activity, acting on acid anhydrides
GO:0030307 IMP positive regulation of cell growth
GO:0032508 IMP DNA duplex unwinding
GO:0034458 IDA 3'-5' RNA helicase activity
GO:0035945 IMP mitochondrial ncRNA surveillance
GO:0035946 IMP mitochondrial mRNA surveillance
GO:0042645 IDA mitochondrial nucleoid
GO:0042803 IPI protein homodimerization activity
GO:0043066 IMP negative regulation of apoptotic process
GO:0044822 IDA poly(A) RNA binding
GO:0045025 IDA mitochondrial degradosome
GO:0070584 IMP mitochondrion morphogenesis
GO:0070827 IMP chromatin maintenance
GO:2000827 IMP mitochondrial RNA surveillance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020273 Supv3l1-001 protein_coding Mus_musculus 0 2405
ENSMUST00000162023 Supv3l1-002 nonsense_mediated_decay Mus_musculus 0 2326
ENSMUST00000159042 Supv3l1-004 retained_intron Mus_musculus 0 520
ENSMUST00000161830 Supv3l1-005 retained_intron Mus_musculus 0 374

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