C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: WD repeat domain 19
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000157796 WDR19 9606 + 4:39182404-39285810 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000399820 WDR19-001 39182404-39285810 protein_coding
  ENST00000502389 WDR19-013 39182531-39194781 retained_intron
  ENST00000502718 WDR19-020 39234767-39237994 processed_transcript
  ENST00000503697 WDR19-002 39182504-39215919 nonsense_mediated_decay
  ENST00000503733 WDR19-018 39276964-39285808 retained_intron
  ENST00000505055 WDR19-012 39182529-39205572 nonsense_mediated_decay
  ENST00000506503 WDR19-006 39182548-39219133 protein_coding
  ENST00000506869 WDR19-003 39182529-39285780 nonsense_mediated_decay
  ENST00000507228 WDR19-015 39228531-39240334 nonsense_mediated_decay
  ENST00000509560 WDR19-010 39182529-39203722 protein_coding
  ENST00000510315 WDR19-017 39278271-39285636 retained_intron
  ENST00000511729 WDR19-009 39182524-39234831 processed_transcript
  ENST00000512095 WDR19-007 39215882-39275339 retained_intron
  ENST00000512112 WDR19-011 39182529-39203727 protein_coding
  ENST00000512448 WDR19-014 39199478-39206115 retained_intron
  ENST00000512534 WDR19-008 39270053-39285809 retained_intron
  ENST00000512588 WDR19-019 39276962-39285810 retained_intron
  ENST00000515631 WDR19-016 39228555-39234875 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000399820ENST00000506503ENST00000506869ENST00000507228ENST00000509560ENST00000512095ENST00000512112ENST00000512534ENST00000512588
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000399820 0.781±0.00 0.313±0.00 1.465±0.00 1.198±0.00 0.676±0.00 2.204±0.00 N/A 1.658±0.36 1.768±0.00 0.440±0.00 N/A 1.918±1.47 0.756±0.03 4.969±2.15
ENST00000506503 N/A N/A 0.964±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506869 N/A 0.930±0.00 N/A 1.596±0.00 0.901±0.00 1.529±0.00 0.286±0.06 0.693±0.00 0.690±0.00 0.908±0.41 N/A 1.364±0.29 0.196±0.00 2.333±0.00
ENST00000507228 N/A N/A N/A N/A N/A N/A 3.043±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000509560 N/A N/A N/A N/A N/A N/A 2.081±0.00 N/A 6.990±0.00 N/A N/A 10.055±0.00 N/A N/A
ENST00000512095 1.296±0.00 0.809±0.00 N/A 1.599±0.00 1.137±0.00 1.325±0.00 0.631±0.00 1.219±0.00 1.242±0.00 1.298±0.16 0.476±0.00 1.414±0.55 0.603±0.00 2.855±0.80
ENST00000512112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.861±0.00 N/A N/A N/A
ENST00000512534 0.720±0.00 1.215±0.00 N/A 1.582±0.00 1.216±0.00 N/A 0.280±0.03 1.406±0.00 1.132±0.00 1.707±0.00 N/A 2.239±1.02 0.264±0.00 6.283±0.00
ENST00000512588 2.404±0.00 N/A N/A N/A N/A N/A 1.010±0.00 3.330±0.00 1.874±0.00 3.790±0.00 0.731±0.00 5.133±3.12 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038P CIL_00038P_0001 CGP 4:39045039-39285810
CIL_00038O CIL_00038O_0001 CGP 4:39182404-39366375

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000902 IEA cell morphogenesis
GO:0001701 IEA in utero embryonic development
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005929 IEA cilium
GO:0007224 IEA smoothened signaling pathway
GO:0030326 IEA embryonic limb morphogenesis
GO:0030991 IDA intraciliary transport particle A
GO:0031076 IEA embryonic camera-type eye development
GO:0031513 ISS nonmotile primary cilium
GO:0031514 ISS motile cilium
GO:0032391 ISS photoreceptor connecting cilium
GO:0035721 IMP intraciliary retrograde transport
GO:0042384 IEA cilium assembly
GO:0042471 IEA ear morphogenesis
GO:0048701 IEA embryonic cranial skeleton morphogenesis
GO:0050877 IEA neurological system process
GO:0055123 IEA digestive system development
GO:0060271 IEA cilium morphogenesis
GO:0060830 IEA ciliary receptor clustering involved in smoothened signaling pathway
GO:0060831 IEA smoothened signaling pathway involved in dorsal/ventral neural tube patterning
GO:0061055 IEA myotome development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037406 wdr19 WD repeat domain 19 protein_coding Danio_rerio
ENSMUSG00000037890 Wdr19 WD repeat domain 19 protein_coding Mus_musculus

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