C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000158296 SLC13A3 9606 - 20:46557823-46684467 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000279027 SLC13A3-001 46557833-46651440 protein_coding
  ENST00000290317 SLC13A3-201 46557823-46670139 protein_coding
  ENST00000372121 SLC13A3-010 46588143-46684467 protein_coding
  ENST00000413164 SLC13A3-009 46559711-46651459 protein_coding
  ENST00000417157 SLC13A3-002 46608709-46670139 protein_coding
  ENST00000420568 SLC13A3-003 46585348-46613725 protein_coding
  ENST00000450298 SLC13A3-004 46583572-46600616 protein_coding
  ENST00000464518 SLC13A3-005 46582911-46588091 processed_transcript
  ENST00000468915 SLC13A3-006 46566356-46676075 protein_coding
  ENST00000472148 SLC13A3-007 46558429-46670139 protein_coding
  ENST00000495082 SLC13A3-008 46559994-46613886 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyLiverLungOvaryPlacentaTestisENST00000279027ENST00000290317ENST00000450298ENST00000472148ENST00000495082
Transcript ID Bladder Brain Kidney Liver Lung Ovary Placenta Testis
ENST00000279027 N/A 0.961±0.20 16.885±0.00 N/A 0.446±0.00 1.905±0.00 7.501±1.75 N/A
ENST00000290317 N/A N/A 1.180±0.00 N/A N/A N/A N/A N/A
ENST00000450298 N/A N/A N/A N/A N/A N/A 62.833±0.00 11.343±0.00
ENST00000472148 7.692±0.00 1.555±0.65 34.294±33.28 5.372±0.00 0.323±0.00 1.740±0.00 16.944±5.49 N/A
ENST00000495082 29.439±0.00 N/A N/A N/A 0.553±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004D2 CIL_0004D2_0001 CGP 20:46540946-46684467
CIL_0004D3 CIL_0004D3_0001 CGP 20:46557823-46689779

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005886 TAS plasma membrane
GO:0006814 IEA sodium ion transport
GO:0006835 IEA dicarboxylic acid transport
GO:0015362 IEA high-affinity sodium:dicarboxylate symporter activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0055085 IEA:TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069478 slc13a3 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 protein_coding Danio_rerio
ENSMUSG00000018459 Slc13a3 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 protein_coding Mus_musculus

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