C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000279027 SLC13A3-001 ENSG00000158296 9606 - 20:46557833-46651440 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLungOvaryPlacentaENST00000279027
Transcript ID Brain Kidney Lung Ovary Placenta
ENST00000279027 0.961±0.20 16.885±0.00 0.446±0.00 1.905±0.00 7.501±1.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004D2 CIL_0004D2_0001 CGP 20:46540946-46684467
CIL_0004D3 CIL_0004D3_0001 CGP 20:46557823-46689779

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005886 TAS plasma membrane
GO:0006814 IEA sodium ion transport
GO:0006835 IEA dicarboxylic acid transport
GO:0015362 IEA high-affinity sodium:dicarboxylate symporter activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0055085 IEA:TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029208 Slc13a3-001 protein_coding Mus_musculus 0 1964
ENSMUST00000109279 Slc13a3-003 protein_coding Mus_musculus 0 1011
ENSMUST00000147107 Slc13a3-004 retained_intron Mus_musculus 0 628
ENSMUST00000143136 Slc13a3-006 retained_intron Mus_musculus 0 333
ENSMUST00000145513 Slc13a3-005 retained_intron Mus_musculus 0 316

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