C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018459 Slc13a3 10090 - 2:165405028-165473230 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029208 Slc13a3-001 165405028-165473230 protein_coding
  ENSMUST00000109279 Slc13a3-003 165405295-165473230 protein_coding
  ENSMUST00000143136 Slc13a3-006 165411884-165420293 retained_intron
  ENSMUST00000145513 Slc13a3-005 165406705-165409066 retained_intron
  ENSMUST00000147107 Slc13a3-004 165444103-165473199 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029208ENSMUST00000109279ENSMUST00000145513
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029208 0.318±0.16 0.547±0.20 0.070±0.04 0.548±0.37 0.398±0.09 0.376±0.07 0.095±0.02 66.631±21.87 3.795±2.87 0.386±0.15 0.045±0.00 0.275±0.14 3.272±2.97 0.090±0.04
ENSMUST00000109279 0.452±0.22 N/A 0.057±0.01 0.609±0.18 1.341±0.29 0.289±0.16 0.059±0.02 135.040±51.01 6.148±4.23 1.035±0.22 0.030±0.01 0.220±0.12 3.220±3.25 0.114±0.03
ENSMUST00000145513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.174±0.00 1.504±0.41 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004D2 CIL_0004D2_0002 CGP 2:165393760-165473230
CIL_0004D3 CIL_0004D3_0002 CGP 2:165405028-165493324

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0006814 IEA sodium ion transport
GO:0006835 IDA dicarboxylic acid transport
GO:0015362 IDA high-affinity sodium:dicarboxylate symporter activity
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069478 slc13a3 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 protein_coding Danio_rerio
ENSG00000158296 SLC13A3 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 protein_coding Homo_sapiens

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