C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glycerophosphodiester phosphodiesterase domain containing 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000158555 GDPD5 9606 - 11:75434640-75525903 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000336898 GDPD5-001 75434640-75525903 protein_coding
  ENST00000443276 GDPD5-201 75434641-75477851 protein_coding
  ENST00000524785 GDPD5-016 75515975-75525256 processed_transcript
  ENST00000526177 GDPD5-007 75434640-75452331 protein_coding
  ENST00000527322 GDPD5-006 75442764-75457786 processed_transcript
  ENST00000527820 GDPD5-005 75434640-75479403 nonsense_mediated_decay
  ENST00000528031 GDPD5-012 75456542-75479317 retained_intron
  ENST00000529095 GDPD5-002 75485305-75525374 processed_transcript
  ENST00000529721 GDPD5-003 75434640-75490751 protein_coding
  ENST00000531441 GDPD5-010 75525284-75525864 processed_transcript
  ENST00000531561 GDPD5-014 75441690-75442697 retained_intron
  ENST00000531759 GDPD5-009 75434939-75438848 retained_intron
  ENST00000532435 GDPD5-011 75462786-75525424 protein_coding
  ENST00000533784 GDPD5-004 75434640-75490289 protein_coding
  ENST00000533805 GDPD5-008 75434641-75449940 protein_coding
  ENST00000533911 GDPD5-013 75443063-75449940 processed_transcript
  ENST00000534322 GDPD5-015 75435565-75441722 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336898ENST00000443276ENST00000526177ENST00000527322ENST00000527820ENST00000529095ENST00000529721ENST00000531759ENST00000532435ENST00000533784ENST00000533805ENST00000533911ENST00000534322
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336898 4.297±0.00 2.277±0.00 0.106±0.00 1.922±0.00 20.190±0.00 1.135±0.00 0.492±0.29 0.459±0.00 N/A 1.080±0.00 2.518±0.00 3.105±1.08 4.861±2.11 5.434±0.96
ENST00000443276 N/A N/A N/A N/A N/A 0.737±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526177 1.272±0.00 1.399±0.00 0.067±0.00 N/A N/A N/A N/A N/A N/A 0.424±0.35 N/A 0.903±0.68 N/A N/A
ENST00000527322 N/A N/A 0.928±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527820 N/A N/A N/A N/A N/A N/A N/A N/A 0.329±0.00 N/A N/A N/A N/A N/A
ENST00000529095 N/A N/A N/A N/A N/A 0.138±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.325±0.00 N/A 12.180±6.02
ENST00000531759 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.282±0.00 N/A N/A
ENST00000532435 N/A N/A N/A N/A N/A N/A 0.956±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000533784 N/A 2.137±0.00 N/A 2.572±0.00 14.651±0.00 0.527±0.34 N/A 0.224±0.00 0.290±0.00 0.816±0.70 N/A N/A N/A 5.213±0.00
ENST00000533805 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.293±0.00 N/A N/A N/A 3.276±0.00
ENST00000533911 N/A N/A N/A N/A N/A 0.188±0.00 N/A N/A 1.990±0.00 N/A N/A N/A N/A N/A
ENST00000534322 N/A N/A 1.091±0.00 1.751±0.00 N/A N/A N/A N/A N/A 0.664±0.00 0.801±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NG CIL_0008NG_0001 VISTA 11:75253021-75855707
CIL_0001SV CIL_0001SV_0002 CGP 11:75434640-75572783

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0006071 IEA glycerol metabolic process
GO:0006629 IEA lipid metabolic process
GO:0008081 IEA phosphoric diester hydrolase activity
GO:0008889 IEA glycerophosphodiester phosphodiesterase activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0021522 IEA spinal cord motor neuron differentiation
GO:0021895 IEA cerebral cortex neuron differentiation
GO:0031175 IEA neuron projection development
GO:0042995 IEA cell projection
GO:0045666 IEA positive regulation of neuron differentiation
GO:0045746 IEA negative regulation of Notch signaling pathway
GO:0048505 IEA regulation of timing of cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076962 gdpd5b glycerophosphodiester phosphodiesterase domain containing 5b protein_coding Danio_rerio
ENSDARG00000077284 gdpd5a glycerophosphodiester phosphodiesterase domain containing 5a protein_coding Danio_rerio
ENSMUSG00000035314 Gdpd5 glycerophosphodiester phosphodiesterase domain containing 5 protein_coding Mus_musculus

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