C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rho GTPase activating protein 35
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000160007 ARHGAP35 9606 + 19:46918676-47005077 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000404338 ARHGAP35-001 46918676-47005077 protein_coding
  ENST00000595822 ARHGAP35-005 46937320-47001425 retained_intron
  ENST00000596593 ARHGAP35-008 46989584-46997750 processed_transcript
  ENST00000598548 ARHGAP35-006 46999085-46999815 processed_transcript
  ENST00000599284 ARHGAP35-007 46999098-47000949 retained_intron
  ENST00000614079 ARHGAP35-201 46918676-47004307 protein_coding
  ENST00000615647 ARHGAP35-202 46918676-47001375 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000404338ENST00000614079ENST00000615647
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000404338 7.838±0.00 7.421±0.00 N/A 15.000±0.00 11.447±0.00 10.500±0.00 7.622±0.00 8.656±0.00 7.148±0.00 2.673±0.00 4.721±0.00 6.274±4.61 1.804±0.53 10.529±1.23
ENST00000614079 1.712±0.00 N/A 2.340±0.00 N/A N/A N/A 5.843±0.00 N/A 3.693±0.00 2.122±0.52 2.252±0.00 1.323±0.00 1.544±0.23 10.018±0.00
ENST00000615647 N/A N/A N/A N/A 2.638±0.00 3.150±0.00 2.995±0.00 N/A N/A 2.535±0.00 2.454±0.00 2.216±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G1 CIL_0008G1_0001 VISTA 19:46806794-47408636

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001843 IEA neural tube closure
GO:0003677 IEA DNA binding
GO:0003714 TAS transcription corepressor activity
GO:0005100 TAS Rho GTPase activator activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IC nucleus
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0007264 TAS:IEA small GTPase mediated signal transduction
GO:0007411 TAS axon guidance
GO:0008360 IEA regulation of cell shape
GO:0010976 IEA positive regulation of neuron projection development
GO:0015629 IEA actin cytoskeleton
GO:0030900 IEA forebrain development
GO:0032321 TAS positive regulation of Rho GTPase activity
GO:0035024 IEA negative regulation of Rho protein signal transduction
GO:0043010 IEA camera-type eye development
GO:0043116 IEA negative regulation of vascular permeability
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060297 arhgap35 Rho GTPase activating protein 35b protein_coding Danio_rerio
ENSDARG00000062577 arhgap35a Rho GTPase activating protein 35a protein_coding Danio_rerio
ENSMUSG00000058230 Arhgap35 Rho GTPase activating protein 35 protein_coding Mus_musculus

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