C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trefoil factor 3 (intestinal)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000160180 TFF3 9606 - 21:42311667-42315651 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000291525 TFF3-201 42312074-42315353 protein_coding
  ENST00000398431 TFF3-002 42312053-42315336 protein_coding
  ENST00000489676 TFF3-003 42312053-42313686 processed_transcript
  ENST00000518498 TFF3-001 42311667-42315651 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000291525ENST00000489676ENST00000518498
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000291525 3.756±0.00 15.874±0.00 0.095±0.00 39.469±27.42 136.360±106.95 0.929±0.00 0.969±0.73 0.725±0.08 24.582±22.10 0.433±0.00 13.081±4.88 N/A 4.686±0.00
ENST00000489676 1.518±0.00 N/A 0.035±0.00 15.170±13.34 249.962±0.00 N/A N/A 0.626±0.00 32.892±31.12 0.545±0.00 15.969±11.44 0.501±0.00 1.166±0.00
ENST00000518498 1.327±0.00 3.746±0.00 0.063±0.00 12.363±11.43 7.311±0.00 0.213±0.00 0.439±0.33 0.241±0.00 N/A 0.236±0.00 4.127±1.65 0.272±0.11 0.670±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004VV CIL_0004VV_0001 CGP 21:42199689-42315651
CIL_0008QJ CIL_0008QJ_0001 VISTA 21:42290762-42894212
CIL_0004Y5 CIL_0004Y5_0001 CGP 21:42311667-42351128

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0006952 TAS defense response
GO:0007586 TAS digestion
GO:0030141 IEA secretory granule
GO:0043434 IEA response to peptide hormone
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000024029 Tff3 trefoil factor 3, intestinal protein_coding Mus_musculus

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