C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004VV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000160179-ENSG00000160180 CGP 9606 21:42199689-42315651
GeneTranscriptPositionBiotype
ENSG00000160179 (ABCG1)
ATP-binding cassette, sub-family G (WHITE), member 1 		ENST00000343687 (ABCG1-005) 42219821-42297244 protein_coding
ENST00000347800 (ABCG1-004) 42216077-42297244 protein_coding
ENST00000361802 (ABCG1-006) 42219118-42297244 protein_coding
ENST00000398437 (ABCG1-008) 42256084-42297244 protein_coding
ENST00000398449 (ABCG1-001) 42219118-42297244 protein_coding
ENST00000398457 (ABCG1-002) 42199689-42297244 protein_coding
ENST00000450121 (ABCG1-010) 42219117-42284648 protein_coding
ENST00000462050 (ABCG1-003) 42199812-42297244 processed_transcript
ENST00000467818 (ABCG1-011) 42276686-42286141 retained_intron
ENST00000472587 (ABCG1-007) 42276344-42297244 retained_intron
ENST00000496783 (ABCG1-009) 42285934-42295352 retained_intron
ENSG00000160180 (TFF3)
trefoil factor 3 (intestinal) 		ENST00000291525 (TFF3-201) 42312074-42315353 protein_coding
ENST00000398431 (TFF3-002) 42312053-42315336 protein_coding
ENST00000489676 (TFF3-003) 42312053-42313686 processed_transcript
ENST00000518498 (TFF3-001) 42311667-42315651 protein_coding
ENSG00000216197 (AP001623.1)
 ENST00000401378 (AP001623.1-201) 42300274-42300345 miRNA
CIL_0004VV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024030-ENSMUSG00000024029 CGP 10090 17:31057698-31129646
GeneTranscriptPositionBiotype
ENSMUSG00000024029 (Tff3)
trefoil factor 3, intestinal 		ENSMUST00000024827 (Tff3-001) 31125306-31129646 protein_coding
ENSMUSG00000024030 (Abcg1)
ATP-binding cassette, sub-family G (WHITE), member 1 		ENSMUST00000024829 (Abcg1-001) 31057698-31115777 protein_coding
ENSMUST00000139013 (Abcg1-002) 31057774-31098759 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004VV_0001ENSG00000160179ENST00000343687ENST00000347800ENST00000361802ENST00000398437ENST00000398449ENST00000398457ENST00000450121ENST00000462050ENST00000467818ENST00000472587ENST00000496783ENSG00000160180ENST00000291525ENST00000398431ENST00000489676ENST00000518498ENSG00000216197ENST00000401378CIL_0004VV_0002ENSMUSG00000024029ENSMUST00000024827ENSMUSG00000024030ENSMUST00000024829ENSMUST00000139013
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004VV_0001ENSG00000160179ENST00000343687ENST00000347800ENST00000361802ENST00000398449ENST00000462050ENST00000467818ENST00000496783ENSG00000160180ENST00000291525ENST00000489676ENST00000518498ENSG00000216197ENST00000401378CIL_0004VV_0002ENSMUSG00000024029ENSMUST00000024827ENSMUSG00000024030ENSMUST00000024829
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000160179 ENST00000343687 N/A N/A N/A N/A N/A N/A N/A N/A 0.964±0.00 N/A N/A N/A N/A N/A
ENST00000347800 N/A N/A 2.386±0.00 N/A 2.180±0.00 1.138±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000361802 34.691±0.00 9.440±0.00 N/A 4.478±0.00 2.039±0.08 N/A N/A 1.746±0.00 1.228±0.00 13.980±0.00 7.128±3.20 1.549±0.00 4.066±2.23 1.296±0.00
ENST00000398437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000398449 15.677±0.00 8.119±0.00 N/A 2.870±1.06 2.192±0.25 6.019±3.17 2.175±0.52 3.085±1.12 2.268±0.00 9.326±0.02 14.836±0.00 3.658±2.23 8.017±1.42 1.913±0.00
ENST00000398457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450121 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.345±0.00
ENST00000467818 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.447±0.00 N/A N/A
ENST00000472587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.261±0.00
ENSG00000160180 ENST00000291525 3.756±0.00 15.874±0.00 N/A 0.095±0.00 39.469±27.42 136.360±106.95 0.929±0.00 0.969±0.73 0.725±0.08 24.582±22.10 0.433±0.00 13.081±4.88 N/A 4.686±0.00
ENST00000398431 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489676 1.518±0.00 N/A N/A 0.035±0.00 15.170±13.34 249.962±0.00 N/A N/A 0.626±0.00 32.892±31.12 0.545±0.00 15.969±11.44 0.501±0.00 1.166±0.00
ENST00000518498 1.327±0.00 3.746±0.00 N/A 0.063±0.00 12.363±11.43 7.311±0.00 0.213±0.00 0.439±0.33 0.241±0.00 N/A 0.236±0.00 4.127±1.65 0.272±0.11 0.670±0.36
ENSG00000216197 ENST00000401378 N/A N/A N/A N/A 0.398±0.00 N/A 0.381±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024029 ENSMUST00000024827 0.435±0.20 0.333±0.11 0.047±0.00 0.320±0.02 0.101±0.00 2800.210±686.87 0.150±0.08 0.079±0.00 57.300±118.74 10.663±0.08 N/A 1.259±0.59 9.632±8.47 0.270±0.20
ENSMUSG00000024030 ENSMUST00000024829 6.661±1.44 6.894±0.98 3.487±0.46 3.727±0.48 17.644±7.50 4.715±0.22 1.621±0.43 4.246±0.95 2.001±0.81 43.551±5.67 0.508±0.38 6.755±2.24 7.071±8.42 0.265±0.21
ENSMUST00000139013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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