C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinol dehydrogenase 13 (all-trans/9-cis)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000160439 RDH13 9606 - 19:55039108-55071291 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000291892 RDH13-002 55044343-55063833 nonsense_mediated_decay
  ENST00000396247 RDH13-001 55044343-55069529 protein_coding
  ENST00000415061 RDH13-003 55044343-55063176 protein_coding
  ENST00000586331 RDH13-021 55039111-55041889 processed_transcript
  ENST00000586945 RDH13-010 55056653-55069529 protein_coding
  ENST00000587026 RDH13-007 55059253-55069540 protein_coding
  ENST00000587046 RDH13-018 55064040-55069892 processed_transcript
  ENST00000587373 RDH13-009 55063901-55069531 processed_transcript
  ENST00000587721 RDH13-015 55047413-55063148 nonsense_mediated_decay
  ENST00000588306 RDH13-008 55063220-55069540 processed_transcript
  ENST00000588941 RDH13-012 55067195-55069502 processed_transcript
  ENST00000589197 RDH13-019 55063508-55069523 processed_transcript
  ENST00000589305 RDH13-016 55050874-55063119 processed_transcript
  ENST00000589605 RDH13-017 55048657-55059174 processed_transcript
  ENST00000590349 RDH13-013 55063752-55069491 processed_transcript
  ENST00000591023 RDH13-011 55063271-55069520 processed_transcript
  ENST00000591603 RDH13-014 55063041-55064368 processed_transcript
  ENST00000591868 RDH13-022 55042039-55044949 processed_transcript
  ENST00000591960 RDH13-005 55039111-55063076 nonsense_mediated_decay
  ENST00000592423 RDH13-020 55039108-55043107 processed_transcript
  ENST00000592573 RDH13-004 55044855-55063086 nonsense_mediated_decay
  ENST00000593134 RDH13-006 55063948-55071291 processed_transcript
  ENST00000610356 RDH13-201 55044324-55063217 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000291892ENST00000415061ENST00000586331ENST00000587721ENST00000592423ENST00000592573ENST00000610356
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000291892 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.530±0.00 N/A N/A N/A N/A
ENST00000415061 2.328±0.00 N/A N/A N/A N/A N/A 3.984±0.00 N/A N/A 1.634±0.00 0.555±0.06 2.728±0.00 14.668±0.59 3.727±0.00
ENST00000586331 N/A N/A N/A 0.887±0.00 N/A N/A N/A 2.557±0.00 0.370±0.00 0.624±0.00 N/A N/A N/A 0.997±0.00
ENST00000587721 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.372±0.00 N/A 6.655±0.00 7.102±0.00 N/A
ENST00000592423 0.570±0.00 1.203±0.00 N/A N/A 1.768±0.00 N/A 1.346±0.00 3.031±0.00 0.414±0.00 0.642±0.00 N/A 1.413±0.41 N/A N/A
ENST00000592573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.129±0.00 N/A N/A N/A
ENST00000610356 N/A 4.833±0.00 0.355±0.00 1.903±0.87 4.286±0.00 2.649±0.52 3.098±0.00 9.072±0.00 1.569±0.00 N/A N/A 3.681±0.34 7.317±0.00 4.683±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005LZ CIL_0005LZ_0001 CGP 19:55013705-55071291
CIL_00068Q CIL_00068Q_0001 CGP 19:55039108-55087923

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005739 IEA mitochondrion
GO:0008152 IEA metabolic process
GO:0009644 IEA response to high light intensity
GO:0010842 IEA retina layer formation
GO:0016491 IEA oxidoreductase activity
GO:0042462 IEA eye photoreceptor cell development
GO:0050662 IEA coenzyme binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008491 RDH13 (1 of 3) retinol dehydrogenase 13 (all-trans/9-cis) protein_coding Danio_rerio
ENSDARG00000034577 RDH13 (2 of 3) retinol dehydrogenase 13 (all-trans/9-cis) protein_coding Danio_rerio
ENSDARG00000054797 RDH13 (3 of 3) retinol dehydrogenase 13 (all-trans/9-cis) protein_coding Danio_rerio
ENSMUSG00000008435 Rdh13 retinol dehydrogenase 13 (all-trans and 9-cis) protein_coding Mus_musculus

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