C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinol dehydrogenase 13 (all-trans and 9-cis)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000008435 Rdh13 10090 - 7:4424770-4445649 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000008579 Rdh13-001 4425667-4445649 protein_coding
  ENSMUST00000119485 Rdh13-002 4424770-4445601 protein_coding
  ENSMUST00000128299 Rdh13-004 4443737-4445642 processed_transcript
  ENSMUST00000138798 Rdh13-006 4435033-4445181 protein_coding
  ENSMUST00000147599 Rdh13-003 4440407-4445593 retained_intron
  ENSMUST00000154033 Rdh13-005 4444202-4445626 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000008579ENSMUST00000138798ENSMUST00000147599
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000008579 8.159±1.95 9.091±0.62 9.101±1.05 9.894±5.23 8.361±1.53 14.823±1.94 8.272±2.53 10.450±1.13 3.190±0.60 8.276±0.35 3.015±0.74 9.772±2.42 10.890±3.34 1.003±0.41
ENSMUST00000138798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.024±0.00
ENSMUST00000147599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.026±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005LZ CIL_0005LZ_0002 CGP 7:4368713-4445649
CIL_00068Q CIL_00068Q_0002 CGP 7:4424770-4479404

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0009644 IMP response to high light intensity
GO:0010842 IMP retina layer formation
GO:0016491 IEA oxidoreductase activity
GO:0042462 IMP eye photoreceptor cell development
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008491 RDH13 (1 of 3) retinol dehydrogenase 13 (all-trans/9-cis) protein_coding Danio_rerio
ENSDARG00000034577 RDH13 (2 of 3) retinol dehydrogenase 13 (all-trans/9-cis) protein_coding Danio_rerio
ENSDARG00000054797 RDH13 (3 of 3) retinol dehydrogenase 13 (all-trans/9-cis) protein_coding Danio_rerio
ENSG00000160439 RDH13 retinol dehydrogenase 13 (all-trans/9-cis) protein_coding Homo_sapiens

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