C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromatin target of PRMT1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000160679 CHTOP 9606 + 1:153633982-153646306 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000368686 CHTOP-005 153638342-153644385 protein_coding
  ENST00000368687 CHTOP-004 153638084-153645470 protein_coding
  ENST00000368690 CHTOP-201 153633982-153646305 protein_coding
  ENST00000368694 CHTOP-001 153634049-153646306 protein_coding
  ENST00000403433 CHTOP-002 153634080-153646302 protein_coding
  ENST00000495554 CHTOP-003 153634075-153645470 processed_transcript
  ENST00000614256 CHTOP-202 153633982-153646305 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000368686ENST00000368687ENST00000368690ENST00000368694ENST00000403433ENST00000495554ENST00000614256
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000368686 N/A N/A N/A 2.830±0.00 2.510±0.00 N/A 1.010±0.00 N/A N/A 2.225±0.00 N/A N/A
ENST00000368687 N/A N/A N/A N/A 17.680±0.00 N/A N/A 20.591±0.00 N/A N/A N/A N/A
ENST00000368690 11.542±0.00 11.301±0.00 N/A N/A 11.749±0.00 N/A N/A 8.654±0.00 19.424±0.00 21.607±1.94 16.517±5.05 13.684±1.91
ENST00000368694 12.178±0.00 N/A 16.870±0.00 N/A N/A 21.114±0.00 7.369±0.00 N/A 18.934±0.00 19.333±2.23 16.171±0.26 25.831±3.71
ENST00000403433 N/A N/A N/A N/A N/A N/A 1.837±0.00 N/A N/A 2.349±0.00 N/A N/A
ENST00000495554 N/A N/A N/A N/A 5.799±0.00 N/A 2.270±0.00 8.623±0.00 N/A 7.494±0.00 N/A N/A
ENST00000614256 N/A N/A N/A N/A N/A N/A N/A 2.422±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000LY CIL_0000LY_0002 CGP 1:153633982-153661830

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000346 IDA transcription export complex
GO:0005515 IPI protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006406 IDA mRNA export from nucleus
GO:0016607 IDA nuclear speck
GO:0032781 IDA positive regulation of ATPase activity
GO:0044822 IDA poly(A) RNA binding
GO:0051096 IDA positive regulation of helicase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057234 chtopa chromatin target of PRMT1a protein_coding Danio_rerio
ENSMUSG00000001017 Chtop chromatin target of PRMT1 protein_coding Mus_musculus

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