C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromatin target of PRMT1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001017 Chtop 10090 - 3:90498956-90509498 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001043 Chtop-004 90498956-90509451 protein_coding
  ENSMUST00000049937 Chtop-001 90498965-90509498 protein_coding
  ENSMUST00000076639 Chtop-006 90498958-90509462 protein_coding
  ENSMUST00000107342 Chtop-003 90499695-90509485 protein_coding
  ENSMUST00000107343 Chtop-002 90498956-90509450 protein_coding
  ENSMUST00000107344 Chtop-007 90498956-90509452 protein_coding
  ENSMUST00000107346 Chtop-005 90499494-90509474 protein_coding
  ENSMUST00000131868 Chtop-009 90503131-90509022 protein_coding
  ENSMUST00000146740 Chtop-008 90502158-90509476 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001043ENSMUST00000049937ENSMUST00000076639ENSMUST00000107342ENSMUST00000107343ENSMUST00000107344ENSMUST00000107346ENSMUST00000146740
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001043 9.728±6.09 N/A 17.108±2.49 25.582±9.76 7.322±1.97 3.425±0.00 6.952±2.09 7.131±2.11 12.030±2.51 14.285±0.99 9.521±1.21 12.068±2.99 11.023±2.01 N/A
ENSMUST00000049937 9.482±1.39 4.905±0.97 23.192±1.95 11.854±0.94 7.252±1.86 12.342±4.06 6.751±1.48 7.800±2.28 19.555±11.34 11.477±2.31 13.629±4.14 16.484±5.09 22.303±7.66 15.605±2.64
ENSMUST00000076639 N/A N/A 9.583±0.64 23.365±13.85 N/A N/A N/A N/A 9.644±1.56 N/A 9.044±1.01 13.049±2.51 10.359±0.00 N/A
ENSMUST00000107342 6.716±2.11 11.578±3.33 N/A N/A 9.197±2.88 14.766±3.78 N/A 4.408±2.30 5.891±1.91 9.418±1.93 N/A 18.484±3.69 6.161±0.31 11.136±1.21
ENSMUST00000107343 N/A N/A N/A 14.568±2.04 9.543±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000107344 N/A 5.452±0.00 N/A 1.780±0.00 3.864±0.00 N/A 4.979±0.80 2.707±0.00 2.493±0.33 8.544±0.86 3.940±0.59 4.483±0.70 N/A N/A
ENSMUST00000107346 8.937±3.44 8.915±1.09 N/A N/A 11.696±1.05 13.994±4.70 N/A 5.366±0.19 4.009±0.77 10.005±0.00 N/A 11.002±2.60 N/A 10.037±0.38
ENSMUST00000146740 N/A 14.468±3.34 N/A N/A 13.606±1.30 5.906±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000346 IEA transcription export complex
GO:0005515 IPI protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006406 IEA mRNA export from nucleus
GO:0016607 IEA nuclear speck
GO:0032781 IEA positive regulation of ATPase activity
GO:0044822 IEA poly(A) RNA binding
GO:0051096 IEA positive regulation of helicase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057234 chtopa chromatin target of PRMT1a protein_coding Danio_rerio
ENSG00000160679 CHTOP chromatin target of PRMT1 protein_coding Homo_sapiens

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