C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromatin target of PRMT1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368694 CHTOP-001 ENSG00000160679 9606 + 1:153634049-153646306 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainKidneyLiverMuscleOvaryPlacentaTestisENST00000368694
Transcript ID Adipose Brain Kidney Liver Muscle Ovary Placenta Testis
ENST00000368694 12.178±0.00 16.870±0.00 21.114±0.00 7.369±0.00 18.934±0.00 19.333±2.23 16.171±0.26 25.831±3.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000LY CIL_0000LY_0002 CGP 1:153633982-153661830

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000346 IDA transcription export complex
GO:0005515 IPI protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006406 IDA mRNA export from nucleus
GO:0016607 IDA nuclear speck
GO:0032781 IDA positive regulation of ATPase activity
GO:0044822 IDA poly(A) RNA binding
GO:0051096 IDA positive regulation of helicase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049937 Chtop-001 protein_coding Mus_musculus 0 1670
ENSMUST00000107344 Chtop-007 protein_coding Mus_musculus 0 1330
ENSMUST00000001043 Chtop-004 protein_coding Mus_musculus 0 1330
ENSMUST00000054711 Gm6365-201 processed_pseudogene Mus_musculus 0 1133
ENSMUST00000107346 Chtop-005 protein_coding Mus_musculus 0 891
ENSMUST00000076639 Chtop-006 protein_coding Mus_musculus 0 887
ENSMUST00000131868 Chtop-009 protein_coding Mus_musculus 0 643
ENSMUST00000146740 Chtop-008 protein_coding Mus_musculus 0 612
ENSMUST00000107342 Chtop-003 protein_coding Mus_musculus 0 566
ENSMUST00000107343 Chtop-002 protein_coding Mus_musculus 0 551

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