C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphate cytidylyltransferase 1, choline, alpha
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000161217 PCYT1A 9606 - 3:196214222-196287957 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000292823 PCYT1A-001 196234368-196287713 protein_coding
  ENST00000411591 PCYT1A-009 196239565-196287726 protein_coding
  ENST00000412869 PCYT1A-014 196247452-196287263 protein_coding
  ENST00000419333 PCYT1A-006 196229842-196270541 protein_coding
  ENST00000430755 PCYT1A-018 196241660-196257806 protein_coding
  ENST00000431016 PCYT1A-005 196238551-196287845 protein_coding
  ENST00000433733 PCYT1A-016 196241528-196247471 protein_coding
  ENST00000438634 PCYT1A-012 196247457-196287677 nonsense_mediated_decay
  ENST00000441879 PCYT1A-011 196214222-196287690 protein_coding
  ENST00000443555 PCYT1A-007 196247508-196287957 protein_coding
  ENST00000444822 PCYT1A-010 196242614-196287690 nonsense_mediated_decay
  ENST00000460677 PCYT1A-002 196242570-196287752 retained_intron
  ENST00000460827 PCYT1A-017 196238791-196240004 retained_intron
  ENST00000473978 PCYT1A-004 196242067-196287674 retained_intron
  ENST00000488235 PCYT1A-015 196242394-196248273 retained_intron
  ENST00000491544 PCYT1A-013 196247467-196287663 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENST00000292823ENST00000430755ENST00000431016
Transcript ID Adrenal Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000292823 2.049±0.00 1.922±0.00 4.545±0.62 5.547±4.48 2.548±0.00 2.632±1.34 N/A 4.872±1.57 8.583±0.00 8.710±0.00
ENST00000430755 N/A N/A N/A N/A N/A N/A 10.388±0.00 N/A N/A N/A
ENST00000431016 N/A N/A N/A 3.750±0.00 N/A 4.526±0.00 N/A N/A N/A 15.334±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QR CIL_0008QR_0001 VISTA 3:195819501-196421470

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004105 ISS choline-phosphate cytidylyltransferase activity
GO:0005515 IEA protein binding
GO:0005789 ISS endoplasmic reticulum membrane
GO:0006644 TAS phospholipid metabolic process
GO:0006656 ISS phosphatidylcholine biosynthetic process
GO:0006657 ISS CDP-choline pathway
GO:0008289 IEA lipid binding
GO:0009058 IEA biosynthetic process
GO:0042587 ISS glycogen granule
GO:0042803 IEA protein homodimerization activity
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004492 pcyt1ab phosphate cytidylyltransferase 1, choline, alpha b protein_coding Danio_rerio
ENSDARG00000011233 pcyt1aa phosphate cytidylyltransferase 1, choline, alpha a protein_coding Danio_rerio
ENSMUSG00000005615 Pcyt1a phosphate cytidylyltransferase 1, choline, alpha isoform protein_coding Mus_musculus

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