C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphate cytidylyltransferase 1, choline, alpha isoform
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000005615 Pcyt1a 10090 + 16:32430921-32475070 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000079791 Pcyt1a-001 32430924-32475070 protein_coding
  ENSMUST00000104893 Pcyt1a-201 32431020-32475065 protein_coding
  ENSMUST00000115137 Pcyt1a-002 32430921-32474704 protein_coding
  ENSMUST00000115140 Pcyt1a-003 32431230-32472037 protein_coding
  ENSMUST00000123199 Pcyt1a-004 32431020-32455311 retained_intron
  ENSMUST00000141421 Pcyt1a-005 32430938-32452253 retained_intron
  ENSMUST00000141772 Pcyt1a-006 32430960-32455441 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079791ENSMUST00000104893ENSMUST00000115137ENSMUST00000115140
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079791 15.293±0.32 14.915±1.38 13.108±0.24 8.090±2.84 13.130±1.90 12.273±1.26 17.741±1.15 17.089±1.35 16.221±2.15 22.136±1.75 26.050±3.29 23.697±5.25 16.763±6.25 5.385±1.65
ENSMUST00000104893 N/A N/A N/A N/A N/A 2.093±0.00 N/A N/A N/A N/A 4.262±0.59 3.711±0.96 N/A 3.397±0.96
ENSMUST00000115137 N/A N/A N/A N/A 3.670±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000115140 N/A 7.906±1.75 N/A N/A 3.105±0.00 5.984±0.68 N/A N/A N/A N/A N/A 8.134±1.39 N/A 24.250±4.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QR CIL_0008QR_0002 VISTA 16:32268412-32870796

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004105 ISS choline-phosphate cytidylyltransferase activity
GO:0005515 IPI protein binding
GO:0005789 IDA endoplasmic reticulum membrane
GO:0006656 IDA phosphatidylcholine biosynthetic process
GO:0006657 ISS CDP-choline pathway
GO:0008289 IEA lipid binding
GO:0042587 IDA glycogen granule
GO:0042803 IEA protein homodimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004492 pcyt1ab phosphate cytidylyltransferase 1, choline, alpha b protein_coding Danio_rerio
ENSDARG00000011233 pcyt1aa phosphate cytidylyltransferase 1, choline, alpha a protein_coding Danio_rerio
ENSG00000161217 PCYT1A phosphate cytidylyltransferase 1, choline, alpha protein_coding Homo_sapiens

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