C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: U2 small nuclear RNA auxiliary factor 1-like 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000161265 U2AF1L4 9606 - 19:35742464-35745445 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000292879 U2AF1L4-005 35742532-35745445 protein_coding
  ENST00000378975 U2AF1L4-006 35742532-35745405 protein_coding
  ENST00000412391 U2AF1L4-201 35742529-35745442 protein_coding
  ENST00000585554 U2AF1L4-008 35742529-35745397 retained_intron
  ENST00000585771 U2AF1L4-017 35744104-35745398 retained_intron
  ENST00000586476 U2AF1L4-001 35743011-35745442 retained_intron
  ENST00000587886 U2AF1L4-015 35744347-35745422 protein_coding
  ENST00000587987 U2AF1L4-007 35742531-35745414 nonsense_mediated_decay
  ENST00000588100 U2AF1L4-014 35744663-35745441 processed_transcript
  ENST00000588892 U2AF1L4-003 35742533-35745414 retained_intron
  ENST00000588980 U2AF1L4-004 35742532-35745402 retained_intron
  ENST00000589429 U2AF1L4-011 35742532-35744687 nonsense_mediated_decay
  ENST00000590135 U2AF1L4-009 35742529-35744660 retained_intron
  ENST00000590650 U2AF1L4-018 35744795-35745353 retained_intron
  ENST00000591057 U2AF1L4-012 35742464-35745418 nonsense_mediated_decay
  ENST00000591084 U2AF1L4-010 35742527-35744699 nonsense_mediated_decay
  ENST00000591855 U2AF1L4-013 35742531-35744563 retained_intron
  ENST00000592913 U2AF1L4-002 35742532-35745426 retained_intron
  ENST00000594792 U2AF1L4-019 35742531-35745157 nonsense_mediated_decay
  ENST00000600296 U2AF1L4-021 35742531-35745176 nonsense_mediated_decay
  ENST00000601236 U2AF1L4-020 35743849-35745416 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleENST00000292879ENST00000587987
Transcript ID Brain Muscle
ENST00000292879 6.048±0.00 N/A
ENST00000587987 N/A 5.412±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000078765 U2af1l4 U2 small nuclear RNA auxiliary factor 1-like 4 protein_coding Mus_musculus

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