C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: U2 small nuclear RNA auxiliary factor 1-like 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000078765 U2af1l4 10090 + 7:30563301-30567960 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000043273 U2af1l4-001 30563321-30565365 protein_coding
  ENSMUST00000108161 U2af1l4-002 30563350-30567960 nonsense_mediated_decay
  ENSMUST00000163276 U2af1l4-028 30563336-30565160 nonsense_mediated_decay
  ENSMUST00000163330 U2af1l4-033 30563879-30565179 protein_coding
  ENSMUST00000163464 U2af1l4-035 30563356-30565179 protein_coding
  ENSMUST00000163482 U2af1l4-005 30563348-30565364 protein_coding
  ENSMUST00000163654 U2af1l4-008 30563325-30565362 protein_coding
  ENSMUST00000163848 U2af1l4-019 30563319-30564481 nonsense_mediated_decay
  ENSMUST00000163994 U2af1l4-023 30563359-30567399 retained_intron
  ENSMUST00000164365 U2af1l4-036 30563395-30565179 nonsense_mediated_decay
  ENSMUST00000164438 U2af1l4-010 30563329-30564611 retained_intron
  ENSMUST00000165009 U2af1l4-031 30563826-30564607 retained_intron
  ENSMUST00000165524 U2af1l4-038 30563307-30565125 processed_transcript
  ENSMUST00000165543 U2af1l4-027 30563360-30564476 retained_intron
  ENSMUST00000165722 U2af1l4-034 30563397-30565179 nonsense_mediated_decay
  ENSMUST00000165773 U2af1l4-022 30563342-30565244 retained_intron
  ENSMUST00000166257 U2af1l4-006 30563356-30565179 protein_coding
  ENSMUST00000166510 U2af1l4-018 30563326-30565351 protein_coding
  ENSMUST00000166864 U2af1l4-029 30563358-30565359 processed_transcript
  ENSMUST00000166960 U2af1l4-009 30563301-30565354 processed_transcript
  ENSMUST00000167024 U2af1l4-012 30563349-30564058 retained_intron
  ENSMUST00000167042 U2af1l4-003 30563344-30567958 nonsense_mediated_decay
  ENSMUST00000167202 U2af1l4-014 30563367-30565172 processed_transcript
  ENSMUST00000167361 U2af1l4-015 30563350-30565361 processed_transcript
  ENSMUST00000167501 U2af1l4-011 30563344-30564738 nonsense_mediated_decay
  ENSMUST00000168222 U2af1l4-021 30563326-30564607 retained_intron
  ENSMUST00000168229 U2af1l4-007 30563338-30564798 nonsense_mediated_decay
  ENSMUST00000168333 U2af1l4-037 30563356-30565179 nonsense_mediated_decay
  ENSMUST00000168555 U2af1l4-016 30563339-30565164 nonsense_mediated_decay
  ENSMUST00000168931 U2af1l4-013 30563358-30564548 protein_coding
  ENSMUST00000169071 U2af1l4-026 30563346-30564501 retained_intron
  ENSMUST00000169283 U2af1l4-025 30563378-30565364 retained_intron
  ENSMUST00000169911 U2af1l4-020 30563330-30564608 retained_intron
  ENSMUST00000169962 U2af1l4-024 30563393-30564355 retained_intron
  ENSMUST00000170453 U2af1l4-017 30563340-30564059 retained_intron
  ENSMUST00000171364 U2af1l4-032 30563871-30564278 processed_transcript
  ENSMUST00000171850 U2af1l4-039 30563356-30565179 protein_coding
  ENSMUST00000171912 U2af1l4-004 30563355-30567955 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043273ENSMUST00000163330ENSMUST00000163464ENSMUST00000165524ENSMUST00000166510ENSMUST00000167042ENSMUST00000167361ENSMUST00000168333ENSMUST00000168555ENSMUST00000168931ENSMUST00000169071ENSMUST00000171850ENSMUST00000171912
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043273 8.351±3.43 N/A 8.857±0.53 N/A N/A N/A 6.460±2.01 5.745±1.18 4.030±0.66 N/A 8.348±0.86 6.013±0.00 5.401±0.00 11.929±0.28
ENSMUST00000163330 17.137±4.43 24.863±7.08 16.978±1.24 24.463±1.76 28.994±5.85 24.537±9.47 14.424±3.65 16.967±2.69 13.039±5.06 23.913±5.02 N/A 31.065±4.46 12.514±3.31 19.435±0.56
ENSMUST00000163464 7.799±0.00 N/A 13.082±0.00 N/A N/A N/A 7.629±2.15 N/A 12.267±3.59 N/A 9.816±1.17 N/A 15.333±0.00 N/A
ENSMUST00000165524 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.414±0.97 N/A N/A N/A
ENSMUST00000166510 N/A 10.014±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167042 2.048±0.35 2.245±0.14 2.565±0.42 4.099±0.94 N/A 1.496±0.30 1.291±0.38 1.350±0.19 1.549±0.79 2.307±0.20 2.915±0.43 3.471±1.68 2.021±0.41 N/A
ENSMUST00000167361 N/A 9.851±1.49 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168333 N/A 12.651±0.00 N/A N/A 14.438±3.66 N/A N/A 8.468±0.00 5.530±0.00 N/A N/A N/A N/A N/A
ENSMUST00000168555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.640±1.60 N/A N/A
ENSMUST00000168931 N/A N/A N/A 77.979±0.00 N/A N/A N/A N/A N/A N/A N/A 72.347±17.10 68.675±25.86 100.697±0.00
ENSMUST00000169071 N/A N/A N/A N/A 8.359±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171850 N/A 20.963±0.86 N/A N/A N/A N/A N/A N/A 8.891±2.92 N/A N/A N/A N/A N/A
ENSMUST00000171912 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.696±0.17 2.993±1.20 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000161265 U2AF1L4 U2 small nuclear RNA auxiliary factor 1-like 4 protein_coding Homo_sapiens
ENSG00000267120 AD000671.6 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000472696} protein_coding Homo_sapiens

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