C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 171, member A2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000161682 FAM171A2 9606 - 17:44353215-44363875 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000293443 FAM171A2-001 44353215-44363875 protein_coding
  ENST00000588067 FAM171A2-002 44356306-44363834 nonsense_mediated_decay
  ENST00000589407 FAM171A2-004 44355967-44363812 nonsense_mediated_decay
  ENST00000592560 FAM171A2-003 44359346-44363800 retained_intron

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000293443ENST00000588067ENST00000592560
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000293443 0.461±0.00 0.696±0.00 6.908±5.33 6.104±0.00 0.532±0.39 0.179±0.11 0.801±0.00 0.093±0.05 0.013±0.00 5.327±5.67 1.317±0.58 1.628±0.80
ENST00000588067 N/A N/A N/A N/A N/A 0.084±0.00 N/A N/A N/A N/A N/A N/A
ENST00000592560 N/A N/A N/A N/A N/A 0.370±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0001 VISTA 17:43966083-44567774
CIL_0007ST CIL_0007ST_0001 VISTA 17:44247434-44848646
CIL_0005J7 CIL_0005J7_0001 CGP 17:44345246-44363875
CIL_0004D6 CIL_0004D6_0002 CGP 17:44353215-44389505

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075249 fam171a2 family with sequence similarity 171, member A2 protein_coding Danio_rerio
ENSDARG00000079656 FAM171A2 (2 of 2) family with sequence similarity 171, member A2 protein_coding Danio_rerio
ENSMUSG00000034685 Fam171a2 family with sequence similarity 171, member A2 protein_coding Mus_musculus

Loading