C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNASEK-C17orf49 readthrough
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000161939 RNASEK-C17orf49 9606 + 17:7012635-7017520 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000547302 RNASEK-C17orf49-004 7013733-7017404 protein_coding
  ENST00000547863 RNASEK-C17orf49-002 7012660-7017520 retained_intron
  ENST00000549775 RNASEK-C17orf49-001 7012635-7017502 retained_intron
  ENST00000607564 RNASEK-C17orf49-005 7013597-7015073 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverMuscleOvaryPlacentaENST00000547302ENST00000547863ENST00000607564
Transcript ID Liver Muscle Ovary Placenta
ENST00000547302 N/A N/A 21.315±0.00 14.681±0.00
ENST00000547863 1.608±0.00 N/A N/A N/A
ENST00000607564 N/A 2.446±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SP CIL_0006SP_0002 CGP 17:7012417-7017520

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015161 zgc:92664 zgc:92664 protein_coding Danio_rerio
ENSDARG00000088755 zgc:103508 zgc:103508 protein_coding Danio_rerio
ENSMUSG00000020831 0610010K14Rik RIKEN cDNA 0610010K14 gene protein_coding Mus_musculus

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