C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 0610010K14 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020831 0610010K14Rik 10090 - 11:70235206-70237914 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021180 0610010K14Rik-014 70235736-70237861 nonsense_mediated_decay
  ENSMUST00000021181 0610010K14Rik-008 70235206-70237914 protein_coding
  ENSMUST00000100950 0610010K14Rik-004 70235362-70237678 protein_coding
  ENSMUST00000102569 0610010K14Rik-011 70235206-70237914 protein_coding
  ENSMUST00000108575 0610010K14Rik-005 70235206-70237853 protein_coding
  ENSMUST00000108576 0610010K14Rik-001 70235404-70237804 protein_coding
  ENSMUST00000108577 0610010K14Rik-002 70235208-70237902 protein_coding
  ENSMUST00000108578 0610010K14Rik-003 70235206-70237914 protein_coding
  ENSMUST00000108579 0610010K14Rik-013 70235206-70237904 protein_coding
  ENSMUST00000134700 0610010K14Rik-009 70235206-70236904 protein_coding
  ENSMUST00000135390 0610010K14Rik-010 70235206-70236196 protein_coding
  ENSMUST00000138658 0610010K14Rik-012 70235379-70237763 processed_transcript
  ENSMUST00000148878 0610010K14Rik-006 70235371-70237489 processed_transcript
  ENSMUST00000150504 0610010K14Rik-007 70236454-70237912 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungOvaryPlacentaENSMUST00000021181ENSMUST00000108578ENSMUST00000134700
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Ovary Placenta
ENSMUST00000021181 25.137±0.00 11.162±1.80 29.109±8.64 22.125±4.37 15.660±5.21 N/A 22.583±7.02 14.478±1.50 17.889±2.44 26.550±0.81
ENSMUST00000108578 N/A 10.173±2.08 22.378±4.78 17.946±3.81 12.138±4.85 8.112±0.00 13.296±5.06 12.317±2.10 15.084±1.23 15.013±1.00
ENSMUST00000134700 N/A N/A N/A N/A N/A N/A N/A N/A 30.824±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SP CIL_0006SP_0003 CGP 11:70235206-70239830

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0008150 ND biological_process
GO:0016568 IEA chromatin modification
GO:0016589 ISS NURF complex
GO:0071339 ISS MLL1 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015161 zgc:92664 zgc:92664 protein_coding Danio_rerio
ENSDARG00000088755 zgc:103508 zgc:103508 protein_coding Danio_rerio
ENSG00000161939 RNASEK-C17orf49 RNASEK-C17orf49 readthrough protein_coding Homo_sapiens
ENSG00000258315 C17orf49 chromosome 17 open reading frame 49 protein_coding Homo_sapiens

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