C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: UBX domain protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000162191 UBXN1 9606 - 11:62676498-62679117 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000294119 UBXN1-001 62676498-62679055 protein_coding
  ENST00000301935 UBXN1-002 62676498-62679090 protein_coding
  ENST00000436354 UBXN1-008 62678209-62679095 retained_intron
  ENST00000524762 UBXN1-015 62676980-62679080 processed_transcript
  ENST00000525004 UBXN1-016 62676897-62678537 processed_transcript
  ENST00000525717 UBXN1-005 62676517-62679067 retained_intron
  ENST00000526919 UBXN1-014 62677538-62679010 retained_intron
  ENST00000527421 UBXN1-012 62676981-62679065 retained_intron
  ENST00000528907 UBXN1-011 62677918-62679073 retained_intron
  ENST00000529640 UBXN1-010 62676504-62679065 protein_coding
  ENST00000531056 UBXN1-013 62678089-62679077 retained_intron
  ENST00000531625 UBXN1-007 62678444-62679073 retained_intron
  ENST00000532904 UBXN1-003 62676498-62679058 retained_intron
  ENST00000533000 UBXN1-017 62676499-62677983 protein_coding
  ENST00000533476 UBXN1-004 62676501-62679073 retained_intron
  ENST00000533908 UBXN1-009 62677805-62679058 retained_intron
  ENST00000534176 UBXN1-006 62676613-62679081 protein_coding
  ENST00000616865 UBXN1-201 62676499-62679117 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000301935ENST00000436354ENST00000524762ENST00000525004ENST00000526919ENST00000533476ENST00000533908ENST00000534176ENST00000616865
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000301935 52.711±0.00 49.170±0.00 1.054±0.00 7.864±0.00 21.859±20.11 15.929±12.71 9.416±8.54 7.557±6.08 9.267±4.00 30.757±27.62 37.848±32.86 69.077±60.90 70.631±19.25 44.222±0.81
ENST00000436354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 41.624±0.00 N/A 74.201±0.00
ENST00000524762 N/A N/A N/A 3.976±0.00 N/A 3.093±0.00 2.030±0.00 2.368±0.00 2.833±0.00 1.129±0.00 1.302±0.00 1.701±0.00 N/A N/A
ENST00000525004 49.622±0.00 71.127±0.00 1.823±0.00 40.376±0.00 39.037±0.00 46.238±0.00 N/A 20.272±0.00 N/A N/A N/A N/A 30.414±0.00 55.948±0.00
ENST00000526919 N/A N/A N/A 19.582±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533476 N/A N/A N/A N/A N/A N/A 0.338±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000533908 N/A N/A N/A N/A N/A N/A N/A 2.149±0.00 N/A N/A N/A N/A N/A N/A
ENST00000534176 56.025±0.00 57.403±0.00 N/A 36.241±0.00 38.871±0.00 80.754±0.00 8.608±7.95 36.470±0.00 11.850±0.00 44.067±0.00 43.741±0.00 23.217±3.31 47.473±0.00 56.118±5.87
ENST00000616865 N/A N/A N/A N/A N/A 32.175±0.00 N/A 11.749±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0001 VISTA 11:62298635-62900076

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000502 IDA proteasome complex
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0030425 IEA dendrite
GO:0031397 IDA negative regulation of protein ubiquitination
GO:0031593 IDA polyubiquitin binding
GO:0031625 IDA ubiquitin protein ligase binding
GO:0032435 IDA negative regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034098 IDA Cdc48p-Npl4p-Ufd1p AAA ATPase complex
GO:0043025 IEA neuronal cell body
GO:0043130 IDA ubiquitin binding
GO:0043161 NAS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051117 IPI ATPase binding
GO:0071796 IDA K6-linked polyubiquitin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086797 ubxn1 UBX domain protein 1 protein_coding Danio_rerio
ENSDARG00000090309 ubxn1 UBX domain protein 1 protein_coding Danio_rerio
ENSMUSG00000071655 Ubxn1 UBX domain protein 1 protein_coding Mus_musculus

Loading