C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syndecan 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000162512 SDC3 9606 - 1:30869467-30908761 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000336798 SDC3-001 30869467-30878740 protein_coding
  ENST00000339394 SDC3-002 30873135-30908761 protein_coding
  ENST00000471567 SDC3-003 30876767-30881429 processed_transcript
  ENST00000487984 SDC3-004 30878676-30880769 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonHeartLiverOvaryENST00000336798
Transcript ID Bladder Colon Heart Liver Ovary
ENST00000336798 0.319±0.00 0.236±0.00 0.373±0.00 0.643±0.00 0.547±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0005796 TAS Golgi lumen
GO:0005886 TAS plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0006024 TAS glycosaminoglycan biosynthetic process
GO:0006027 TAS glycosaminoglycan catabolic process
GO:0007603 TAS phototransduction, visible light
GO:0008092 IEA cytoskeletal protein binding
GO:0016020 ISS membrane
GO:0016021 IEA integral component of membrane
GO:0030198 TAS extracellular matrix organization
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0043202 TAS lysosomal lumen
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088962 sdc3 syndecan 3 protein_coding Danio_rerio
ENSMUSG00000025743 Sdc3 syndecan 3 protein_coding Mus_musculus

Loading