C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syndecan 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025743 Sdc3 10090 + 4:130792537-130826319 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000070478 Sdc3-001 130792537-130826319 protein_coding
  ENSMUST00000140623 Sdc3-002 130816845-130822250 retained_intron
  ENSMUST00000141297 Sdc3-004 130814304-130819059 protein_coding
  ENSMUST00000146093 Sdc3-003 130792704-130817273 retained_intron
  ENSMUST00000152591 Sdc3-005 130811938-130819059 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070478ENSMUST00000152591
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070478 20.565±2.82 159.529±7.83 20.331±5.10 34.979±11.20 26.123±3.33 15.732±0.96 10.943±1.67 10.155±0.68 9.802±3.45 39.061±4.17 1.113±0.09 29.163±5.48 4.331±1.83 7.081±0.38
ENSMUST00000152591 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 38.667±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002AF CIL_0002AF_0002 CGP 4:130663321-130826319

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005796 TAS Golgi lumen
GO:0005886 TAS plasma membrane
GO:0008092 IEA cytoskeletal protein binding
GO:0016020 IEA:ISS membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088962 sdc3 syndecan 3 protein_coding Danio_rerio
ENSG00000162512 SDC3 syndecan 3 protein_coding Homo_sapiens

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