C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vascular cell adhesion molecule 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000162692 VCAM1 9606 + 1:100719742-100739045 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000294728 VCAM1-001 100719760-100739045 protein_coding
  ENST00000347652 VCAM1-002 100719755-100739045 protein_coding
  ENST00000370115 VCAM1-003 100719764-100739038 protein_coding
  ENST00000370119 VCAM1-004 100719742-100738613 protein_coding
  ENST00000603679 VCAM1-005 100735175-100739039 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000294728ENST00000347652ENST00000370115ENST00000370119ENST00000603679
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000294728 3.565±0.00 45.448±0.00 5.250±0.00 2.893±0.00 4.710±1.45 3.366±1.28 0.673±0.37 20.155±12.06 5.277±0.74 27.163±0.00 1.532±0.00 9.655±5.53 8.808±1.86 4.692±3.56
ENST00000347652 N/A N/A 1.134±0.00 0.214±0.00 N/A 0.823±0.00 N/A 3.271±0.00 N/A N/A N/A 3.345±0.00 N/A N/A
ENST00000370115 N/A N/A N/A 0.440±0.00 N/A N/A N/A N/A N/A N/A 0.345±0.00 N/A N/A N/A
ENST00000370119 1.728±0.00 N/A 1.196±0.00 N/A N/A N/A N/A N/A N/A 6.664±2.63 N/A 1.891±0.91 4.760±2.00 0.559±0.00
ENST00000603679 N/A N/A N/A 0.125±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00072X CIL_00072X_0002 CGP 1:100719742-100895998

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001666 IEA response to hypoxia
GO:0002102 IDA podosome
GO:0002526 IEA acute inflammatory response
GO:0002544 IEA chronic inflammatory response
GO:0005178 IDA integrin binding
GO:0005515 IEA protein binding
GO:0005615 IDA extracellular space
GO:0005769 IDA early endosome
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005886 TAS plasma membrane
GO:0005902 IDA microvillus
GO:0007155 IDA:IEA cell adhesion
GO:0007157 IDA heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007159 IDA leukocyte cell-cell adhesion
GO:0007160 IDA cell-matrix adhesion
GO:0007507 IEA heart development
GO:0007568 IEA aging
GO:0007584 IEA response to nutrient
GO:0008131 IDA primary amine oxidase activity
GO:0009308 IDA amine metabolic process
GO:0009897 IDA external side of plasma membrane
GO:0009986 IDA cell surface
GO:0010043 IEA response to zinc ion
GO:0010212 IEA response to ionizing radiation
GO:0016021 IEA integral component of membrane
GO:0016032 IEA viral process
GO:0016337 IEA single organismal cell-cell adhesion
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0022614 IEP membrane to membrane docking
GO:0030175 IDA filopodium
GO:0030183 IC B cell differentiation
GO:0030198 TAS extracellular matrix organization
GO:0032496 IEA response to lipopolysaccharide
GO:0035094 IEA response to nicotine
GO:0035924 IEA cellular response to vascular endothelial growth factor stimulus
GO:0042102 IDA positive regulation of T cell proliferation
GO:0042383 IEA sarcolemma
GO:0045177 IDA apical part of cell
GO:0045471 IEA response to ethanol
GO:0050776 TAS regulation of immune response
GO:0050839 IPI cell adhesion molecule binding
GO:0050901 IDA leukocyte tethering or rolling
GO:0055114 IDA oxidation-reduction process
GO:0060326 IEA cell chemotaxis
GO:0060333 TAS interferon-gamma-mediated signaling pathway
GO:0060669 IEA embryonic placenta morphogenesis
GO:0060710 IEA chorio-allantoic fusion
GO:0070062 IDA extracellular vesicular exosome
GO:0071065 IDA alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex
GO:0071333 IEA cellular response to glucose stimulus
GO:0071356 IEA cellular response to tumor necrosis factor
GO:0071944 IEA cell periphery

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062479 vcam1 vascular cell adhesion molecule 1 protein_coding Danio_rerio
ENSDARG00000078201 si:dkey-60b12.4 vascular cell adhesion molecule 1 protein_coding Danio_rerio
ENSMUSG00000027962 Vcam1 vascular cell adhesion molecule 1 protein_coding Mus_musculus

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