C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vascular cell adhesion molecule 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000347652 VCAM1-002 ENSG00000162692 9606 + 1:100719755-100739045 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonKidneyOvaryENST00000347652
Transcript ID Bladder Brain Colon Kidney Ovary
ENST00000347652 1.134±0.00 0.214±0.00 0.823±0.00 3.271±0.00 3.345±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00072X CIL_00072X_0002 CGP 1:100719742-100895998

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002102 IDA podosome
GO:0005178 IDA integrin binding
GO:0005515 IEA protein binding
GO:0005615 IDA extracellular space
GO:0005769 IDA early endosome
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005886 TAS plasma membrane
GO:0005902 IDA microvillus
GO:0007155 IDA:IEA cell adhesion
GO:0007157 IDA heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007159 IDA leukocyte cell-cell adhesion
GO:0007160 IDA cell-matrix adhesion
GO:0008131 IDA primary amine oxidase activity
GO:0009308 IDA amine metabolic process
GO:0009897 IDA external side of plasma membrane
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane
GO:0016032 IEA viral process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0022614 IEP membrane to membrane docking
GO:0030175 IDA filopodium
GO:0030183 IC B cell differentiation
GO:0030198 TAS extracellular matrix organization
GO:0042102 IDA positive regulation of T cell proliferation
GO:0045177 IDA apical part of cell
GO:0050776 TAS regulation of immune response
GO:0050839 IPI cell adhesion molecule binding
GO:0050901 IDA leukocyte tethering or rolling
GO:0055114 IDA oxidation-reduction process
GO:0060333 TAS interferon-gamma-mediated signaling pathway
GO:0070062 IDA extracellular vesicular exosome
GO:0071065 IDA alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029574 Vcam1-201 protein_coding Mus_musculus 0 782

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