C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163069 SGCB 9606 - 4:52020706-52038482 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000381431 SGCB-001 52020706-52038482 protein_coding
  ENST00000506357 SGCB-002 52028771-52038245 nonsense_mediated_decay
  ENST00000514133 SGCB-003 52028829-52033640 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000381431ENST00000506357
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000381431 7.266±0.00 5.830±0.00 2.982±0.00 9.407±4.84 10.961±5.51 12.132±7.61 10.983±5.94 6.805±6.10 4.441±3.50 5.646±2.62 14.525±5.85 5.186±3.62 6.266±0.64 8.705±6.32
ENST00000506357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.757±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001MR CIL_0001MR_0001 CGP 4:51993702-52038482
CIL_0001CP CIL_0001CP_0001 CGP 4:52020706-52097292

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005887 TAS integral component of plasma membrane
GO:0007517 IEA muscle organ development
GO:0016010 IDA dystrophin-associated glycoprotein complex
GO:0016011 IEA dystroglycan complex
GO:0016012 IEA sarcoglycan complex
GO:0016021 IEA integral component of membrane
GO:0042383 IEA sarcolemma
GO:0048747 IEA muscle fiber development
GO:0055013 IEA cardiac muscle cell development
GO:0097084 IEA vascular smooth muscle cell development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052341 sgcb sarcoglycan, beta (dystrophin-associated glycoprotein) protein_coding Danio_rerio
ENSMUSG00000029156 Sgcb sarcoglycan, beta (dystrophin-associated glycoprotein) protein_coding Mus_musculus

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