C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001CP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163069-ENSG00000163071 CGP 9606 4:52020706-52097292
GeneTranscriptPositionBiotype
ENSG00000163069 (SGCB)
sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) 		ENST00000381431 (SGCB-001) 52020706-52038482 protein_coding
ENST00000506357 (SGCB-002) 52028771-52038245 nonsense_mediated_decay
ENST00000514133 (SGCB-003) 52028829-52033640 nonsense_mediated_decay
ENSG00000163071 (SPATA18)
spermatogenesis associated 18 		ENST00000295213 (SPATA18-001) 52051331-52097292 protein_coding
ENST00000419395 (SPATA18-002) 52051416-52095893 protein_coding
ENST00000503055 (SPATA18-008) 52051461-52062324 nonsense_mediated_decay
ENST00000505038 (SPATA18-009) 52051542-52072032 nonsense_mediated_decay
ENST00000505320 (SPATA18-004) 52051461-52094887 nonsense_mediated_decay
ENST00000506829 (SPATA18-006) 52051412-52072156 processed_transcript
ENST00000508915 (SPATA18-007) 52051416-52072013 nonsense_mediated_decay
ENST00000510549 (SPATA18-010) 52078344-52079900 retained_intron
ENST00000511028 (SPATA18-003) 52051419-52082664 retained_intron
ENST00000514670 (SPATA18-005) 52051409-52076946 processed_transcript
ENSG00000251040 (RP11-535C7.1)
 ENST00000511875 (RP11-535C7.1-001) 52044805-52046954 lincRNA
CIL_0001CP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029156-ENSMUSG00000029155 CGP 10090 5:73632749-73679484
GeneTranscriptPositionBiotype
ENSMUSG00000029155 (Spata18)
spermatogenesis associated 18 		ENSMUST00000041422 (Spata18-201) 73651380-73679096 protein_coding
ENSMUST00000071077 (Spata18-202) 73651380-73679484 protein_coding
ENSMUST00000113548 (Spata18-203) 73657535-73679482 protein_coding
ENSMUST00000178631 (Spata18-204) 73651380-73679096 protein_coding
ENSMUSG00000029156 (Sgcb)
sarcoglycan, beta (dystrophin-associated glycoprotein) 		ENSMUST00000081170 (Sgcb-201) 73632749-73647713 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001CP_0001ENSG00000163069ENST00000381431ENST00000506357ENST00000514133ENSG00000163071ENST00000295213ENST00000419395ENST00000503055ENST00000505038ENST00000505320ENST00000506829ENST00000508915ENST00000510549ENST00000511028ENST00000514670ENSG00000251040ENST00000511875CIL_0001CP_0002ENSMUSG00000029155ENSMUST00000041422ENSMUST00000071077ENSMUST00000113548ENSMUST00000178631ENSMUSG00000029156ENSMUST00000081170
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001CP_0001ENSG00000163069ENST00000381431ENST00000506357ENSG00000163071ENST00000295213ENST00000419395ENST00000503055ENST00000505038ENST00000505320ENST00000506829ENST00000510549ENST00000511028ENST00000514670ENSG00000251040ENST00000511875CIL_0001CP_0002ENSMUSG00000029155ENSMUST00000041422ENSMUST00000071077ENSMUST00000113548ENSMUST00000178631ENSMUSG00000029156ENSMUST00000081170
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163069 ENST00000381431 7.266±0.00 5.830±0.00 2.982±0.00 9.407±4.84 10.961±5.51 12.132±7.61 10.983±5.94 6.805±6.10 4.441±3.50 5.646±2.62 14.525±5.85 5.186±3.62 6.266±0.64 8.705±6.32
ENST00000506357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.757±0.00 N/A N/A
ENST00000514133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000163071 ENST00000295213 0.072±0.00 N/A N/A 0.168±0.12 N/A N/A N/A 0.056±0.00 N/A 2.696±0.00 N/A 0.447±0.53 0.214±0.11 N/A
ENST00000419395 0.082±0.00 N/A 0.521±0.00 0.114±0.04 0.567±0.00 0.351±0.00 N/A N/A 0.262±0.00 2.467±0.00 N/A 0.120±0.03 0.359±0.00 7.755±2.78
ENST00000503055 N/A N/A N/A N/A N/A N/A N/A 1.675±0.00 N/A N/A N/A N/A N/A N/A
ENST00000505038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.513±0.00 N/A
ENST00000505320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 30.173±11.35
ENST00000506829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 85.410±0.00
ENST00000508915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510549 N/A N/A N/A N/A 1.983±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511028 N/A N/A N/A N/A 0.266±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.888±0.00 N/A N/A
ENSG00000251040 ENST00000511875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.111±0.53
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029155 ENSMUST00000041422 N/A 0.075±0.00 N/A 0.202±0.00 N/A N/A 0.191±0.06 N/A N/A N/A N/A 2.932±0.54 0.018±0.00 N/A
ENSMUST00000071077 N/A N/A 0.023±0.00 N/A N/A N/A 0.172±0.06 N/A N/A 7.550±1.56 N/A 3.984±2.64 N/A 209.543±5.96
ENSMUST00000113548 0.044±0.02 N/A 0.006±0.00 0.254±0.00 0.036±0.01 N/A 0.222±0.00 0.057±0.03 0.016±0.01 3.621±1.00 0.030±0.00 2.906±1.18 0.008±0.00 N/A
ENSMUST00000178631 N/A N/A N/A 0.276±0.00 0.055±0.00 N/A 0.110±0.00 0.069±0.01 0.021±0.00 N/A 0.032±0.00 4.666±0.00 0.016±0.00 62.760±14.84
ENSMUSG00000029156 ENSMUST00000081170 9.936±2.44 4.334±0.82 12.850±0.21 6.123±1.74 8.574±2.12 2.645±0.83 27.684±2.56 3.773±0.75 1.072±0.45 6.807±1.30 23.430±1.18 7.896±1.95 2.561±1.19 12.659±5.46

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