C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0001MR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000188993-ENSG00000163069 CGP 9606 4:51993702-52038482
GeneTranscriptPositionBiotype
ENSG00000163069 (SGCB)
sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)
ENST00000381431 (SGCB-001) 52020706-52038482 protein_coding
ENST00000506357 (SGCB-002) 52028771-52038245 nonsense_mediated_decay
ENST00000514133 (SGCB-003) 52028829-52033640 nonsense_mediated_decay
ENSG00000188993 (LRRC66)
leucine rich repeat containing 66
ENST00000343457 (LRRC66-001) 51993702-52017620 protein_coding
CIL_0001MR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000067206-ENSMUSG00000029156 CGP 10090 5:73606643-73647713
GeneTranscriptPositionBiotype
ENSMUSG00000029156 (Sgcb)
sarcoglycan, beta (dystrophin-associated glycoprotein)
ENSMUST00000081170 (Sgcb-201) 73632749-73647713 protein_coding
ENSMUSG00000067206 (Lrrc66)
leucine rich repeat containing 66
ENSMUST00000087177 (Lrrc66-001) 73606643-73632505 protein_coding
ENSMUST00000152215 (Lrrc66-002) 73629676-73630311 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001MR_0001ENSG00000163069ENST00000381431ENST00000506357ENST00000514133ENSG00000188993ENST00000343457CIL_0001MR_0002ENSMUSG00000029156ENSMUST00000081170ENSMUSG00000067206ENSMUST00000087177ENSMUST00000152215
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001MR_0001ENSG00000163069ENST00000381431ENST00000506357ENSG00000188993ENST00000343457CIL_0001MR_0002ENSMUSG00000029156ENSMUST00000081170ENSMUSG00000067206ENSMUST00000087177ENSMUST00000152215
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163069 ENST00000381431 7.266±0.00 5.830±0.00 2.982±0.00 9.407±4.84 10.961±5.51 12.132±7.61 10.983±5.94 6.805±6.10 4.441±3.50 5.646±2.62 14.525±5.85 5.186±3.62 6.266±0.64 8.705±6.32
ENST00000506357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.757±0.00 N/A N/A
ENST00000514133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000188993 ENST00000343457 0.019±0.00 0.063±0.00 0.168±0.00 0.148±0.03 0.488±0.18 0.130±0.00 0.049±0.02 0.605±0.00 0.026±0.01 0.064±0.00 0.514±0.16 0.140±0.08 0.016±0.01 0.349±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029156 ENSMUST00000081170 9.936±2.44 4.334±0.82 12.850±0.21 6.123±1.74 8.574±2.12 2.645±0.83 27.684±2.56 3.773±0.75 1.072±0.45 6.807±1.30 23.430±1.18 7.896±1.95 2.561±1.19 12.659±5.46
ENSMUSG00000067206 ENSMUST00000087177 0.031±0.01 N/A 0.026±0.02 0.014±0.00 0.015±0.01 2.416±0.46 0.022±0.01 2.218±0.72 0.019±0.01 0.053±0.03 0.011±0.00 0.114±0.08 0.041±0.02 0.632±0.27
ENSMUST00000152215 N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A 0.046±0.01 N/A N/A 0.833±0.00 0.372±0.00 N/A

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