C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cytoplasmic linker associated protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163539 CLASP2 9606 - 3:33496245-33718356 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000313350 CLASP2-007 33602413-33645492 protein_coding
  ENST00000333778 CLASP2-008 33602444-33645274 protein_coding
  ENST00000359576 CLASP2-201 33496249-33718213 protein_coding
  ENST00000399362 CLASP2-002 33496245-33718356 protein_coding
  ENST00000461133 CLASP2-010 33497755-33659105 protein_coding
  ENST00000462878 CLASP2-012 33682979-33688368 retained_intron
  ENST00000464961 CLASP2-009 33496245-33505451 retained_intron
  ENST00000467956 CLASP2-011 33689730-33718010 retained_intron
  ENST00000468888 CLASP2-001 33496245-33718049 protein_coding
  ENST00000475576 CLASP2-023 33573170-33584798 protein_coding
  ENST00000476251 CLASP2-017 33498584-33535448 nonsense_mediated_decay
  ENST00000476433 CLASP2-016 33622153-33645469 processed_transcript
  ENST00000480013 CLASP2-003 33496993-33659441 protein_coding
  ENST00000480385 CLASP2-021 33538923-33560876 protein_coding
  ENST00000482896 CLASP2-013 33622187-33659672 processed_transcript
  ENST00000485378 CLASP2-025 33612009-33645490 protein_coding
  ENST00000486796 CLASP2-015 33644382-33659107 retained_intron
  ENST00000487200 CLASP2-006 33602443-33645503 protein_coding
  ENST00000487553 CLASP2-018 33498467-33535366 protein_coding
  ENST00000491045 CLASP2-022 33570731-33576421 retained_intron
  ENST00000493577 CLASP2-020 33558336-33559341 retained_intron
  ENST00000494261 CLASP2-019 33535373-33545111 retained_intron
  ENST00000496954 CLASP2-024 33619690-33659140 protein_coding
  ENST00000498331 CLASP2-014 33626988-33659602 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000359576ENST00000399362ENST00000461133ENST00000462878ENST00000464961ENST00000468888ENST00000480013ENST00000487553
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000359576 2.221±0.00 N/A N/A N/A 1.569±0.00 1.700±0.00 3.188±0.00 1.387±0.00 0.227±0.00 1.426±0.00 N/A 0.902±0.10 1.102±0.20 2.908±0.00
ENST00000399362 N/A N/A N/A N/A N/A N/A N/A 1.224±0.00 N/A N/A 1.351±0.00 1.246±0.00 N/A N/A
ENST00000461133 1.746±0.00 3.263±0.00 1.743±0.00 22.936±0.00 2.082±0.28 2.468±0.00 2.899±0.39 1.492±0.30 2.685±1.96 2.469±1.35 4.079±2.46 1.944±0.89 1.332±0.19 1.035±0.00
ENST00000462878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.113±0.00 N/A N/A
ENST00000464961 N/A N/A N/A N/A 1.305±0.00 N/A N/A N/A N/A N/A N/A 0.406±0.00 N/A 0.887±0.00
ENST00000468888 N/A N/A N/A 12.730±0.00 1.364±0.00 N/A N/A N/A N/A N/A N/A N/A 0.425±0.00 1.173±0.00
ENST00000480013 N/A N/A N/A 16.013±4.64 0.900±0.00 3.589±0.00 2.535±0.00 2.229±0.00 0.176±0.00 1.028±0.00 1.970±0.00 1.320±0.00 1.133±0.00 1.747±0.31
ENST00000487553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.824±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000776 IEA kinetochore
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005737 NAS cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005802 IDA trans-Golgi network
GO:0005828 TAS kinetochore microtubule
GO:0005829 TAS cytosol
GO:0005874 IDA microtubule
GO:0005881 IDA cytoplasmic microtubule
GO:0005886 IDA plasma membrane
GO:0005938 IDA cell cortex
GO:0007020 IMP microtubule nucleation
GO:0007026 NAS negative regulation of microtubule depolymerization
GO:0007067 IEA mitotic nuclear division
GO:0007163 TAS establishment or maintenance of cell polarity
GO:0007411 TAS axon guidance
GO:0008017 IEA microtubule binding
GO:0008107 NAS galactoside 2-alpha-L-fucosyltransferase activity
GO:0016020 IDA membrane
GO:0016477 IEA cell migration
GO:0031023 IMP microtubule organizing center organization
GO:0031110 IMP regulation of microtubule polymerization or depolymerization
GO:0032587 IDA ruffle membrane
GO:0032886 IMP regulation of microtubule-based process
GO:0034453 IMP microtubule anchoring
GO:0036065 NAS fucosylation
GO:0051010 IDA microtubule plus-end binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020345 clasp2 cytoplasmic linker associated protein 2 protein_coding Danio_rerio
ENSMUSG00000033392 Clasp2 CLIP associating protein 2 protein_coding Mus_musculus

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