C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromosome 3 open reading frame 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163608 C3orf17 9606 - 3:113002440-113019861 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000314400 C3orf17-001 113002440-113019839 protein_coding
  ENST00000383675 C3orf17-002 113002444-113019733 protein_coding
  ENST00000460410 C3orf17-017 113011045-113019832 nonsense_mediated_decay
  ENST00000461381 C3orf17-004 113005944-113019671 nonsense_mediated_decay
  ENST00000462295 C3orf17-006 113005481-113019666 nonsense_mediated_decay
  ENST00000464816 C3orf17-013 113010504-113011275 retained_intron
  ENST00000469169 C3orf17-008 113005243-113019664 nonsense_mediated_decay
  ENST00000469809 C3orf17-010 113004954-113019658 nonsense_mediated_decay
  ENST00000470663 C3orf17-021 113012577-113019681 nonsense_mediated_decay
  ENST00000472166 C3orf17-015 113013275-113019160 protein_coding
  ENST00000472637 C3orf17-011 113004917-113019654 nonsense_mediated_decay
  ENST00000472705 C3orf17-009 113005176-113019664 nonsense_mediated_decay
  ENST00000472762 C3orf17-025 113008171-113011305 processed_transcript
  ENST00000473284 C3orf17-007 113005243-113019861 nonsense_mediated_decay
  ENST00000474311 C3orf17-012 113004964-113008800 retained_intron
  ENST00000482229 C3orf17-024 113008171-113011536 retained_intron
  ENST00000486271 C3orf17-003 113004917-113019706 retained_intron
  ENST00000489848 C3orf17-005 113005322-113019670 nonsense_mediated_decay
  ENST00000491121 C3orf17-018 113011093-113019721 nonsense_mediated_decay
  ENST00000494164 C3orf17-016 113011056-113019851 nonsense_mediated_decay
  ENST00000494575 C3orf17-022 113011262-113019671 processed_transcript
  ENST00000494891 C3orf17-023 113012539-113019603 retained_intron
  ENST00000496206 C3orf17-020 113010658-113019644 nonsense_mediated_decay
  ENST00000496340 C3orf17-019 113012793-113019671 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000314400ENST00000383675ENST00000462295ENST00000469169ENST00000469809ENST00000472637ENST00000474311ENST00000486271ENST00000489848
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000314400 2.844±0.00 N/A N/A 1.490±0.00 2.094±0.00 2.427±0.00 1.476±1.15 1.392±0.00 1.215±0.15 1.118±0.00 3.102±0.00 2.806±1.31 1.501±1.05 2.146±0.09
ENST00000383675 N/A 4.521±0.00 N/A 2.785±0.00 1.251±0.00 N/A N/A N/A N/A 1.050±0.00 N/A N/A N/A N/A
ENST00000462295 N/A N/A N/A N/A N/A N/A N/A 3.437±0.00 N/A N/A N/A N/A N/A 3.429±0.00
ENST00000469169 N/A N/A 1.073±0.00 2.698±0.00 2.861±0.00 N/A 0.760±0.00 N/A 2.601±0.00 3.043±0.00 N/A 2.274±0.00 N/A N/A
ENST00000469809 N/A N/A N/A 3.172±0.00 N/A N/A N/A 4.998±0.00 2.215±0.00 2.101±0.00 N/A 3.516±0.17 1.797±0.00 N/A
ENST00000472637 4.383±0.00 N/A N/A N/A 2.923±0.00 2.924±0.00 N/A 1.870±0.00 N/A 1.342±0.00 2.380±0.00 2.681±0.00 1.849±0.50 6.241±0.00
ENST00000474311 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.256±0.00 N/A N/A
ENST00000486271 N/A N/A N/A N/A N/A 0.994±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489848 N/A N/A N/A N/A N/A N/A 0.711±0.00 N/A N/A N/A N/A 1.320±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UB CIL_0008UB_0001 VISTA 3:112792647-113397560

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0016021 IEA integral component of membrane
GO:0045665 IEA negative regulation of neuron differentiation
GO:0045747 IEA positive regulation of Notch signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043566 C9H3orf17 chromosome 3 open reading frame 17 protein_coding Danio_rerio
ENSMUSG00000036208 BC027231 cDNA sequence BC027231 protein_coding Mus_musculus

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