C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cDNA sequence BC027231
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036208 BC027231 10090 + 16:44724301-44737284 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048788 BC027231-001 44724301-44737284 protein_coding
  ENSMUST00000123673 BC027231-004 44724357-44731364 nonsense_mediated_decay
  ENSMUST00000130805 BC027231-002 44726167-44734129 retained_intron
  ENSMUST00000132610 BC027231-003 44727119-44734726 nonsense_mediated_decay
  ENSMUST00000147804 BC027231-005 44724357-44736573 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048788ENSMUST00000147804
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048788 3.075±0.92 7.220±0.00 3.233±1.06 2.115±0.44 2.150±0.32 4.982±0.28 0.863±0.06 1.676±0.24 2.673±0.93 2.130±0.94 1.100±0.15 4.357±2.01 4.018±1.76 2.088±0.50
ENSMUST00000147804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.002±0.00 6.033±2.75 4.343±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UB CIL_0008UB_0002 VISTA 16:44376757-44981297

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IDA nucleus
GO:0045665 IDA negative regulation of neuron differentiation
GO:0045747 IMP positive regulation of Notch signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043566 C9H3orf17 chromosome 3 open reading frame 17 protein_coding Danio_rerio
ENSG00000163608 C3orf17 chromosome 3 open reading frame 17 protein_coding Homo_sapiens

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