C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163629 PTPN13 9606 + 4:86594315-86815171 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000316707 PTPN13-002 86594732-86815149 protein_coding
  ENST00000411767 PTPN13-003 86594732-86815149 protein_coding
  ENST00000427191 PTPN13-001 86594315-86815157 protein_coding
  ENST00000436978 PTPN13-201 86594315-86815171 protein_coding
  ENST00000502971 PTPN13-006 86594317-86690303 protein_coding
  ENST00000507902 PTPN13-008 86595693-86689061 protein_coding
  ENST00000508063 PTPN13-009 86758669-86762934 retained_intron
  ENST00000511105 PTPN13-010 86763009-86766653 retained_intron
  ENST00000511467 PTPN13-005 86635252-86815149 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000316707ENST00000411767ENST00000427191ENST00000436978ENST00000511467
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000316707 0.953±0.00 0.612±0.00 N/A 1.136±0.35 0.938±0.36 0.874±0.01 N/A 4.032±0.00 0.202±0.00 1.422±0.62 N/A 1.492±0.23 0.498±0.15 3.904±0.23
ENST00000411767 N/A 0.417±0.00 4.894±0.00 0.977±0.31 0.357±0.00 1.079±0.00 0.576±0.00 N/A 2.058±0.00 N/A 0.159±0.00 1.537±0.47 0.297±0.00 N/A
ENST00000427191 0.401±0.00 N/A 2.744±0.00 1.478±0.78 1.204±0.17 0.420±0.03 0.477±0.00 2.927±0.00 3.566±0.00 1.837±0.00 N/A 2.014±1.01 0.230±0.10 3.004±0.39
ENST00000436978 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.532±0.00 0.212±0.03 N/A
ENST00000511467 N/A N/A N/A 0.942±0.00 N/A 0.606±0.00 0.363±0.00 2.345±0.00 N/A 4.172±0.00 0.120±0.00 1.149±0.23 0.222±0.00 1.368±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052Z CIL_00052Z_0002 CGP 4:86015123-86815171
CIL_0006J4 CIL_0006J4_0001 CGP 4:86594315-86849263

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004725 IEA:IDA protein tyrosine phosphatase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IDA plasma membrane
GO:0006470 TAS:IEA protein dephosphorylation
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0030027 IDA lamellipodium
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0043005 IEA neuron projection
GO:0044297 IEA cell body
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000073862 ptpn13 protein tyrosine phosphatase, non-receptor type 13 protein_coding Danio_rerio
ENSMUSG00000034573 Ptpn13 protein tyrosine phosphatase, non-receptor type 13 protein_coding Mus_musculus

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