C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006J4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163629-ENSG00000145283 CGP 9606 4:86594315-86849263
GeneTranscriptPositionBiotype
ENSG00000145283 (SLC10A6)
solute carrier family 10 (sodium/bile acid cotransporter), member 6 		ENST00000273905 (SLC10A6-001) 86823468-86849263 protein_coding
ENST00000505535 (SLC10A6-002) 86825448-86849124 processed_transcript
ENSG00000163629 (PTPN13)
protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) 		ENST00000316707 (PTPN13-002) 86594732-86815149 protein_coding
ENST00000411767 (PTPN13-003) 86594732-86815149 protein_coding
ENST00000427191 (PTPN13-001) 86594315-86815157 protein_coding
ENST00000436978 (PTPN13-201) 86594315-86815171 protein_coding
ENST00000502971 (PTPN13-006) 86594317-86690303 protein_coding
ENST00000507902 (PTPN13-008) 86595693-86689061 protein_coding
ENST00000508063 (PTPN13-009) 86758669-86762934 retained_intron
ENST00000511105 (PTPN13-010) 86763009-86766653 retained_intron
ENST00000511467 (PTPN13-005) 86635252-86815149 protein_coding
CIL_0006J4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034573-ENSMUSG00000029321 CGP 10090 5:103425192-103629403
GeneTranscriptPositionBiotype
ENSMUSG00000029321 (Slc10a6)
solute carrier family 10 (sodium/bile acid cotransporter family), member 6 		ENSMUST00000031263 (Slc10a6-001) 103605711-103629403 protein_coding
ENSMUSG00000034573 (Ptpn13)
protein tyrosine phosphatase, non-receptor type 13 		ENSMUST00000048957 (Ptpn13-201) 103425192-103598359 protein_coding
ENSMUSG00000084126 (Gm15844)
predicted gene 15844 		ENSMUST00000118016 (Gm15844-001) 103624471-103625046 processed_pseudogene
ENSMUSG00000088474 (Gm23085)
predicted gene, 23085 		ENSMUST00000157849 (Gm23085-201) 103602587-103602879 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006J4_0001ENSG00000145283ENST00000273905ENST00000505535ENSG00000163629ENST00000316707ENST00000411767ENST00000427191ENST00000436978ENST00000502971ENST00000507902ENST00000508063ENST00000511105ENST00000511467CIL_0006J4_0002ENSMUSG00000029321ENSMUST00000031263ENSMUSG00000034573ENSMUST00000048957ENSMUSG00000084126ENSMUST00000118016ENSMUSG00000088474ENSMUST00000157849
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006J4_0001ENSG00000145283ENST00000273905ENST00000505535ENSG00000163629ENST00000316707ENST00000411767ENST00000427191ENST00000436978ENST00000511467CIL_0006J4_0002ENSMUSG00000029321ENSMUST00000031263ENSMUSG00000034573ENSMUST00000048957ENSMUSG00000084126ENSMUST00000118016ENSMUSG00000088474ENSMUST00000157849
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000145283 ENST00000273905 3.129±0.00 0.387±0.00 0.045±0.00 0.158±0.09 0.949±0.33 0.963±0.67 0.168±0.08 0.156±0.03 1.086±0.00 0.656±0.00 0.646±0.00 0.520±0.40 0.077±0.06 0.617±0.00
ENST00000505535 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.104±0.00 N/A
ENSG00000163629 ENST00000316707 0.953±0.00 0.612±0.00 N/A 1.136±0.35 0.938±0.36 0.874±0.01 N/A 4.032±0.00 0.202±0.00 1.422±0.62 N/A 1.492±0.23 0.498±0.15 3.904±0.23
ENST00000411767 N/A 0.417±0.00 4.894±0.00 0.977±0.31 0.357±0.00 1.079±0.00 0.576±0.00 N/A 2.058±0.00 N/A 0.159±0.00 1.537±0.47 0.297±0.00 N/A
ENST00000427191 0.401±0.00 N/A 2.744±0.00 1.478±0.78 1.204±0.17 0.420±0.03 0.477±0.00 2.927±0.00 3.566±0.00 1.837±0.00 N/A 2.014±1.01 0.230±0.10 3.004±0.39
ENST00000436978 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.532±0.00 0.212±0.03 N/A
ENST00000502971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508063 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511467 N/A N/A N/A 0.942±0.00 N/A 0.606±0.00 0.363±0.00 2.345±0.00 N/A 4.172±0.00 0.120±0.00 1.149±0.23 0.222±0.00 1.368±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029321 ENSMUST00000031263 3.559±2.54 0.801±0.15 2.590±0.32 0.057±0.03 2.689±0.24 0.545±0.15 1.025±0.42 0.372±0.09 0.037±0.03 11.952±3.53 0.562±0.21 1.236±0.47 0.342±0.27 0.400±0.18
ENSMUSG00000034573 ENSMUST00000048957 7.243±5.31 1.689±0.36 13.063±0.92 3.678±0.48 2.621±0.52 3.654±0.49 0.793±0.12 10.753±2.34 0.466±0.30 9.363±0.99 0.212±0.08 13.382±4.01 6.606±5.76 2.355±0.58
ENSMUSG00000084126 ENSMUST00000118016 0.161±0.02 N/A 0.055±0.00 N/A 0.085±0.01 0.163±0.00 N/A N/A N/A 0.120±0.00 N/A N/A N/A N/A
ENSMUSG00000088474 ENSMUST00000157849 0.575±0.00 N/A 0.218±0.00 N/A N/A N/A N/A N/A N/A 0.571±0.00 N/A N/A 0.038±0.00 0.255±0.00

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