C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transglutaminase 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163810 TGM4 9606 + 3:44874608-44914990 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000296125 TGM4-001 44874611-44914990 protein_coding
  ENST00000422219 TGM4-003 44874635-44901570 nonsense_mediated_decay
  ENST00000459830 TGM4-008 44903535-44907202 retained_intron
  ENST00000471637 TGM4-009 44874623-44876490 processed_transcript
  ENST00000490928 TGM4-004 44874608-44889170 retained_intron
  ENST00000495844 TGM4-007 44890339-44896739 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastKidneyLiverLungMuscleOvaryPlacentaENST00000296125ENST00000459830
Transcript ID Bladder Brain Breast Kidney Liver Lung Muscle Ovary Placenta
ENST00000296125 0.129±0.00 0.023±0.00 0.005±0.00 0.027±0.00 0.126±0.00 0.009±0.00 0.176±0.00 0.016±0.01 0.028±0.00
ENST00000459830 0.123±0.00 N/A 0.097±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000741 CIL_000741_0001 CGP 3:44861869-44914990
CIL_000130 CIL_000130_0001 CGP 3:44874608-44976185

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003810 NAS:IEA protein-glutamine gamma-glutamyltransferase activity
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0018149 IEA peptide cross-linking
GO:0031012 IDA extracellular matrix
GO:0042628 IEA mating plug formation
GO:0046872 IEA metal ion binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000025787 Tgm4 transglutaminase 4 (prostate) protein_coding Mus_musculus

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