C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Scm-like with four mbt domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163935 SFMBT1 9606 - 3:52903572-53046750 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000394752 SFMBT1-001 52903572-53046068 protein_coding
  ENST00000470575 SFMBT1-006 52954315-53045269 processed_transcript
  ENST00000474837 SFMBT1-002 52969233-53046750 processed_transcript
  ENST00000482396 SFMBT1-005 52943353-53046052 protein_coding
  ENST00000483069 SFMBT1-004 52943434-53046663 protein_coding
  ENST00000485494 SFMBT1-003 53043136-53046057 processed_transcript
  ENST00000492146 SFMBT1-007 52921703-52928495 retained_intron
  ENST00000497586 SFMBT1-008 52943566-53046641 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394752ENST00000470575
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394752 0.634±0.00 0.534±0.00 1.478±0.00 1.311±0.39 1.183±0.18 1.964±0.05 1.415±0.01 1.335±0.00 3.584±2.49 0.984±0.38 2.327±1.08 25.675±4.06
ENST00000470575 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 73.685±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002QV CIL_0002QV_0002 CGP 3:52836219-53046750

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003714 TAS transcription corepressor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA:IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007283 IEA spermatogenesis
GO:0016568 IEA chromatin modification
GO:0030154 IEA cell differentiation
GO:0042393 IDA histone binding
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0048635 IMP negative regulation of muscle organ development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044915 sfmbt1 Scm-like with four mbt domains 1 protein_coding Danio_rerio
ENSMUSG00000006527 Sfmbt1 Scm-like with four mbt domains 1 protein_coding Mus_musculus

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