C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Scm-like with four mbt domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000006527 Sfmbt1 10090 + 14:30714849-30822713 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000054230 Sfmbt1-001 30715615-30822713 protein_coding
  ENSMUST00000112177 Sfmbt1-004 30716491-30818346 protein_coding
  ENSMUST00000112184 Sfmbt1-002 30714849-30817963 protein_coding
  ENSMUST00000131706 Sfmbt1-003 30715167-30815084 protein_coding
  ENSMUST00000132451 Sfmbt1-005 30774097-30818345 protein_coding
  ENSMUST00000133629 Sfmbt1-006 30796351-30798106 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054230ENSMUST00000112177ENSMUST00000112184ENSMUST00000131706ENSMUST00000132451
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054230 0.398±0.22 0.322±0.00 1.202±0.33 1.868±0.79 0.465±0.04 0.208±0.06 0.231±0.06 0.334±0.06 1.113±0.77 0.369±0.16 0.926±0.21 0.227±0.10 1.193±1.18 2.936±0.48
ENSMUST00000112177 1.036±0.49 0.650±0.00 1.226±0.14 2.358±0.71 0.527±0.05 0.377±0.16 0.423±0.14 0.897±0.38 1.666±1.21 0.558±0.09 0.746±0.05 1.007±0.57 2.253±1.29 7.469±0.68
ENSMUST00000112184 N/A N/A N/A N/A N/A N/A 0.236±0.03 N/A N/A 0.335±0.00 0.543±0.00 0.895±0.93 N/A 6.490±0.00
ENSMUST00000131706 0.866±0.00 N/A N/A 3.265±0.00 0.505±0.31 0.171±0.00 0.472±0.00 0.540±0.00 N/A 0.328±0.01 N/A 1.834±1.37 1.337±0.21 15.854±0.00
ENSMUST00000132451 0.550±0.00 0.682±0.00 N/A N/A 0.159±0.00 0.305±0.14 N/A 0.428±0.03 N/A N/A N/A 0.794±0.19 0.654±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA:ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007283 TAS spermatogenesis
GO:0016568 IEA chromatin modification
GO:0030154 IEA cell differentiation
GO:0042393 ISS histone binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0048635 ISS negative regulation of muscle organ development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044915 sfmbt1 Scm-like with four mbt domains 1 protein_coding Danio_rerio
ENSG00000163935 SFMBT1 Scm-like with four mbt domains 1 protein_coding Homo_sapiens

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