C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Scm-like with four mbt domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394752 SFMBT1-001 ENSG00000163935 9606 - 3:52903572-53046068 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394752
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394752 0.634±0.00 0.534±0.00 1.478±0.00 1.311±0.39 1.183±0.18 1.964±0.05 1.415±0.01 1.335±0.00 3.584±2.49 0.984±0.38 2.327±1.08 25.675±4.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002QV CIL_0002QV_0002 CGP 3:52836219-53046750

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003714 TAS transcription corepressor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA:IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007283 IEA spermatogenesis
GO:0016568 IEA chromatin modification
GO:0030154 IEA cell differentiation
GO:0042393 IDA histone binding
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0048635 IMP negative regulation of muscle organ development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054230 Sfmbt1-001 protein_coding Mus_musculus 0 3620
ENSMUST00000112177 Sfmbt1-004 protein_coding Mus_musculus 0 3240
ENSMUST00000112184 Sfmbt1-002 protein_coding Mus_musculus 0 2964
ENSMUST00000131706 Sfmbt1-003 protein_coding Mus_musculus 0 2163
ENSMUST00000132451 Sfmbt1-005 protein_coding Mus_musculus 0 2152
ENSMUST00000133629 Sfmbt1-006 retained_intron Mus_musculus 0 244

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