C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sphingomyelin synthase 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164023 SGMS2 9606 + 4:107824563-107915047 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000359079 SGMS2-002 107893238-107910953 protein_coding
  ENST00000394684 SGMS2-001 107824563-107915047 protein_coding
  ENST00000394686 SGMS2-003 107893274-107910953 protein_coding
  ENST00000503385 SGMS2-010 107894248-107895687 protein_coding
  ENST00000503862 SGMS2-006 107825208-107908731 protein_coding
  ENST00000504754 SGMS2-011 107907200-107908227 processed_transcript
  ENST00000506462 SGMS2-007 107824563-107895547 processed_transcript
  ENST00000506993 SGMS2-009 107893256-107895657 protein_coding
  ENST00000515332 SGMS2-008 107824882-107895353 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000359079ENST00000394684ENST00000504754
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000359079 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.070±0.00
ENST00000394684 1.176±0.00 1.227±0.00 0.711±0.00 2.959±0.91 2.675±0.15 1.290±0.22 3.293±0.00 2.475±0.00 4.119±0.03 1.099±0.43 2.014±0.64 2.259±0.00
ENST00000504754 0.110±0.00 0.208±0.00 N/A 0.327±0.00 0.450±0.00 N/A 0.051±0.00 N/A 0.110±0.00 0.124±0.07 N/A 0.115±0.09

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005794 IDA Golgi apparatus
GO:0005886 TAS plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0006665 TAS sphingolipid metabolic process
GO:0006686 IDA sphingomyelin biosynthetic process
GO:0016020 IEA membrane
GO:0016301 IEA kinase activity
GO:0016310 IEA phosphorylation
GO:0030148 TAS sphingolipid biosynthetic process
GO:0030173 IDA integral component of Golgi membrane
GO:0033188 IEA sphingomyelin synthase activity
GO:0044281 TAS small molecule metabolic process
GO:0045203 IEA integral component of cell outer membrane
GO:0047493 IDA ceramide cholinephosphotransferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036897 SGMS2 (1 of 2) sphingomyelin synthase 2 protein_coding Danio_rerio
ENSDARG00000052520 sgms2 sphingomyelin synthase 2 protein_coding Danio_rerio
ENSMUSG00000050931 Sgms2 sphingomyelin synthase 2 protein_coding Mus_musculus

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