C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sphingomyelin synthase 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000050931 Sgms2 10090 - 3:131318985-131344940 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000090246 Sgms2-001 131318985-131344933 protein_coding
  ENSMUST00000126569 Sgms2-002 131342110-131344940 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000090246ENSMUST00000126569
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000090246 3.127±0.00 0.741±0.30 0.137±0.00 2.411±0.72 5.816±2.37 0.442±0.12 12.900±0.51 3.442±2.92 1.974±0.17 0.160±0.01 5.366±2.45 5.079±1.65
ENSMUST00000126569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.618±1.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097H CIL_00097H_0002 VISTA 3:130836337-131437858
CIL_0000FH CIL_0000FH_0002 CGP 3:131290491-131344940

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005794 ISA Golgi apparatus
GO:0005887 ISS integral component of plasma membrane
GO:0006686 ISS sphingomyelin biosynthetic process
GO:0016301 IEA kinase activity
GO:0016310 IEA phosphorylation
GO:0030173 ISS integral component of Golgi membrane
GO:0033188 IEA sphingomyelin synthase activity
GO:0045203 IEA integral component of cell outer membrane
GO:0047493 ISS ceramide cholinephosphotransferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036897 SGMS2 (1 of 2) sphingomyelin synthase 2 protein_coding Danio_rerio
ENSDARG00000052520 sgms2 sphingomyelin synthase 2 protein_coding Danio_rerio
ENSG00000164023 SGMS2 sphingomyelin synthase 2 protein_coding Homo_sapiens

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