C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sphingomyelin synthase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394684 SGMS2-001 ENSG00000164023 9606 + 4:107824563-107915047 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000394684
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000394684 1.176±0.00 1.227±0.00 0.711±0.00 2.959±0.91 2.675±0.15 1.290±0.22 3.293±0.00 2.475±0.00 4.119±0.03 1.099±0.43 2.014±0.64 2.259±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005794 IDA Golgi apparatus
GO:0005886 TAS plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0006665 TAS sphingolipid metabolic process
GO:0006686 IDA sphingomyelin biosynthetic process
GO:0016020 IEA membrane
GO:0016301 IEA kinase activity
GO:0016310 IEA phosphorylation
GO:0030148 TAS sphingolipid biosynthetic process
GO:0030173 IDA integral component of Golgi membrane
GO:0033188 IEA sphingomyelin synthase activity
GO:0044281 TAS small molecule metabolic process
GO:0045203 IEA integral component of cell outer membrane
GO:0047493 IDA ceramide cholinephosphotransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090246 Sgms2-001 protein_coding Mus_musculus 0 1327
ENSMUST00000126569 Sgms2-002 protein_coding Mus_musculus 8e-36 158

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